STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB68269.1KEGG: clc:Calla_1127 5.7e-78 cysteine desulfurase; K04487 cysteine desulfurase; Psort location: Cytoplasmic, score: 9.97. (368 aa)    
Predicted Functional Partners:
KXB68579.1
SUF system FeS assembly protein, NifU family; KEGG: hbo:Hbor_34450 2.2e-05 cysteine desulfurase; Psort location: Cytoplasmic, score: 8.96.
  
 0.992
thiI
Thiamine biosynthesis/tRNA modification protein ThiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS.
 
 0.944
KXB67339.1
Selenium metabolism protein YedF; KEGG: drm:Dred_1242 7.1e-25 SirA family protein; K04085 tRNA 2-thiouridine synthesizing protein A; Psort location: Cytoplasmic, score: 8.96; Belongs to the sulfur carrier protein TusA family.
   
 0.925
mnmA
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
 
  
 0.899
KXB67124.1
Putative cysteine desulfurase; KEGG: tsh:Tsac_1554 7.3e-78 class V aminotransferase; K04487 cysteine desulfurase; Psort location: Cytoplasmic, score: 9.97.
  
  
 
0.846
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
    
 
 0.824
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
   
 0.791
KXB68267.1
MaoC-like protein; KEGG: sax:USA300HOU_0030 1.6e-18 maoC; acyl dehydratase MaoC; Psort location: Cytoplasmic, score: 8.96.
       0.721
KXB66612.1
Putative HTH-type transcriptional regulator CymR; KEGG: hmc:HYPMC_1094 5.9e-17 Rrf2 family transcriptional regulator K04487; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.650
KXB67031.1
KEGG: apb:SAR116_0013 1.1e-10 BadM/Rrf2 family transcriptional regulator; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.644
Your Current Organism:
Peptoniphilus coxii
NCBI taxonomy Id: 755172
Other names: ATCC BAA-2106, CCUG 59622, JCM 16892, P. coxii, Peptoniphilus coxii Citron et al. 2013, Peptoniphilus sp. RMA 16757, strain RMA 16757
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