STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB68282.1Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00. (210 aa)    
Predicted Functional Partners:
KXB68283.1
Putative RNA polymerase sigma-B factor; KEGG: cpy:Cphy_2685 1.3e-23 RNA polymerase sigma 28 subunit FliA/WhiG K02405; Psort location: Cytoplasmic, score: 9.97; Belongs to the sigma-70 factor family.
       0.801
KXB68285.1
STAS domain protein; KEGG: ava:Ava_0744 0.00014 anti-sigma-factor antagonist (STAS) and sugar transfersase.
       0.801
KXB68284.1
Hypothetical protein; KEGG: apr:Apre_0008 3.4e-09 putative anti-sigma regulatory factor; K04757 anti-sigma B factor; Psort location: Cytoplasmic, score: 8.96.
       0.789
gyrA
DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
       0.710
gyrB
DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
       0.709
recF
DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family.
       0.642
KXB67912.1
Hypothetical protein; KEGG: ppo:PPM_2151 0.00023 xynX5; exoglucanase xynX Exocellobiohydrolase; 1,4-beta-cellobiohydrolase; Flags: Precursor.
  
     0.587
KXB65172.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.569
KXB68280.1
Transcriptional regulator, MarR family; KEGG: ssr:SALIVB_0385 9.1e-05 enoyl-CoA hydratase; Psort location: Cytoplasmic, score: 8.96.
 
     0.561
KXB68289.1
Putative S4 domain protein YaaA; KEGG: pbr:PB2503_08754 5.1e-05 Hemolysin HlyA; K06442 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase.
 
     0.543
Your Current Organism:
Peptoniphilus coxii
NCBI taxonomy Id: 755172
Other names: ATCC BAA-2106, CCUG 59622, JCM 16892, P. coxii, Peptoniphilus coxii Citron et al. 2013, Peptoniphilus sp. RMA 16757, strain RMA 16757
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