STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB68031.1Hypothetical protein. (100 aa)    
Predicted Functional Partners:
tmk
dTMP kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
 
    0.853
KXB68032.1
Hypothetical protein.
 
    
0.831
KXB68034.1
PSP1 protein; KEGG: gka:GK0026 1.3e-71 signal peptidase II; Psort location: Cytoplasmic, score: 8.96.
  
    0.831
KXB68033.1
KEGG: mas:Mahau_0369 5.0e-21 DNA polymerase III subunit delta'; K02341 DNA polymerase III subunit delta'; Psort location: Cytoplasmic, score: 8.96.
  
    0.817
KXB68035.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.761
KXB68036.1
Hypothetical protein.
       0.707
KXB68037.1
Ferritin-like protein; Iron-storage protein.
       0.651
KXB68029.1
Rubrerythrin; KEGG: cpr:CPR_0938 4.4e-37 periplasmic [Fe] hydrogenase 1 K00532; Psort location: Cytoplasmic, score: 8.96.
       0.543
KXB65323.1
DHHA1 domain protein; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family.
  
    0.458
def
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
   
    0.454
Your Current Organism:
Peptoniphilus coxii
NCBI taxonomy Id: 755172
Other names: ATCC BAA-2106, CCUG 59622, JCM 16892, P. coxii, Peptoniphilus coxii Citron et al. 2013, Peptoniphilus sp. RMA 16757, strain RMA 16757
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