STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB67289.1KEGG: lin:lin2684 3.6e-14 hypothetical protein; K01104 protein-tyrosine phosphatase; Psort location: Cytoplasmic, score: 8.96; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. (127 aa)    
Predicted Functional Partners:
KXB67290.1
KEGG: pfr:PFREUD_22870 3.0e-42 rpiB1; ribose-5-phosphate isomerase 1 K01808; Psort location: Cytoplasmic, score: 8.96.
  
 
  0.881
KXB67293.1
KEGG: dca:Desca_2638 3.2e-116 UDP-N-acetylglucosamine 2-epimerase K01791; Psort location: Cytoplasmic, score: 9.97.
    
  0.849
KXB67292.1
Glycosyltransferase, group 4 family; KEGG: tmt:Tmath_0189 3.6e-85 glycosyl transferase; K13685 UDP-N-acetylglucosamine:undecaprenyl-P N-acetylglucosaminyl 1-P transferase; Psort location: CytoplasmicMembrane, score: 10.00.
 
    0.830
KXB67294.1
KEGG: ctx:Clo1313_1544 2.5e-45 serine-type D-Ala-D-Ala carboxypeptidase K07258; Psort location: CytoplasmicMembrane, score: 9.99; Belongs to the peptidase S11 family.
 
     0.809
upp
Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.
       0.800
KXB67288.1
Sua5/YciO/YrdC/YwlC family protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.
 
  
  0.785
KXB65282.1
Hypothetical protein; KEGG: bya:BANAU_1282 0.00074 clpC3; ATP-dependent Clp protease ATP-binding subunit ClpC K03697; Psort location: Cytoplasmic, score: 8.96.
  
   
 0.666
KXB65281.1
ATP:guanido phosphotransferase, catalytic domain protein; KEGG: ctc:CTC02634 3.9e-56 ATP:guanido phosphotransferase K00934; Psort location: Cytoplasmic, score: 8.96.
  
  
 0.646
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
 
 
   0.630
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 
 0.615
Your Current Organism:
Peptoniphilus coxii
NCBI taxonomy Id: 755172
Other names: ATCC BAA-2106, CCUG 59622, JCM 16892, P. coxii, Peptoniphilus coxii Citron et al. 2013, Peptoniphilus sp. RMA 16757, strain RMA 16757
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