STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB67335.1D-proline reductase, PrdA proprotein; KEGG: cdl:CDR20291_3100 2.2e-69 hypothetical protein; K10795 D-proline reductase (dithiol) PrdD; Psort location: Cytoplasmic, score: 9.97. (247 aa)    
Predicted Functional Partners:
KXB68290.1
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
   
 0.998
KXB67329.1
Hypothetical protein; KEGG: amt:Amet_0665 2.3e-29 D-proline reductase K10793; Psort location: Cytoplasmic, score: 9.97.
  
  0.982
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
   
 0.980
KXB67325.1
Hypothetical protein; KEGG: aoe:Clos_0032 1.5e-56 D-proline reductase K10796; Psort location: Cytoplasmic, score: 9.26.
     0.979
KXB67333.1
KEGG: cbi:CLJ_B2705 1.3e-57 prdB; D-proline reductase, PrdB subunit K10794; Psort location: Cytoplasmic, score: 9.97.
  
 0.967
KXB67334.1
Hypothetical protein; KEGG: cdl:CDR20291_3101 1.3e-14 prdB; proline reductase; K10794 D-proline reductase (dithiol) PrdB; Psort location: Cytoplasmic, score: 9.26.
 
     0.938
KXB68415.1
Exodeoxyribonuclease III; KEGG: ere:EUBREC_0501 9.5e-101 exodeoxyribonuclease; K01142 exodeoxyribonuclease III; Psort location: Cytoplasmic, score: 9.97.
   
 
  0.927
KXB65601.1
DEAD2 domain protein; KEGG: dhd:Dhaf_2947 6.5e-141 DEAD/DEAH box helicase; K10844 DNA excision repair protein ERCC-2; Psort location: Cytoplasmic, score: 9.97.
   
 0.893
KXB65067.1
RecF/RecN/SMC protein; KEGG: bce:BC1852 1.6e-34 exonuclease SbcC K03546; Psort location: Cytoplasmic, score: 8.96.
   
  0.884
KXB67332.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.878
Your Current Organism:
Peptoniphilus coxii
NCBI taxonomy Id: 755172
Other names: ATCC BAA-2106, CCUG 59622, JCM 16892, P. coxii, Peptoniphilus coxii Citron et al. 2013, Peptoniphilus sp. RMA 16757, strain RMA 16757
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