STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB67336.1Hypothetical protein. (39 aa)    
Predicted Functional Partners:
KXB67337.1
Proline racemase; KEGG: cdf:CD3237 4.4e-135 prdF; proline racemase; K01777 proline racemase; Psort location: Cytoplasmic, score: 8.96.
       0.773
KXB67338.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.697
KXB67335.1
D-proline reductase, PrdA proprotein; KEGG: cdl:CDR20291_3100 2.2e-69 hypothetical protein; K10795 D-proline reductase (dithiol) PrdD; Psort location: Cytoplasmic, score: 9.97.
       0.453
KXB67334.1
Hypothetical protein; KEGG: cdl:CDR20291_3101 1.3e-14 prdB; proline reductase; K10794 D-proline reductase (dithiol) PrdB; Psort location: Cytoplasmic, score: 9.26.
       0.419
Your Current Organism:
Peptoniphilus coxii
NCBI taxonomy Id: 755172
Other names: ATCC BAA-2106, CCUG 59622, JCM 16892, P. coxii, Peptoniphilus coxii Citron et al. 2013, Peptoniphilus sp. RMA 16757, strain RMA 16757
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