STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
selDSelenide, water dikinase; Synthesizes selenophosphate from selenide and ATP. (342 aa)    
Predicted Functional Partners:
selA
L-seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
 
  
 0.981
KXB67339.1
Selenium metabolism protein YedF; KEGG: drm:Dred_1242 7.1e-25 SirA family protein; K04085 tRNA 2-thiouridine synthesizing protein A; Psort location: Cytoplasmic, score: 8.96; Belongs to the sulfur carrier protein TusA family.
 
   
 0.962
KXB66274.1
Pyridine nucleotide-disulfide oxidoreductase family protein; KEGG: cyt:cce_4341 2.5e-38 hypothetical protein; K01008 selenide, water dikinase; Psort location: Cytoplasmic, score: 8.96.
  
  0.954
KXB65307.1
KEGG: apr:Apre_0764 3.0e-72 thioredoxin reductase; K00384 thioredoxin reductase (NADPH); Psort location: Cytoplasmic, score: 9.97.
     
 0.828
KXB68580.1
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
    
  0.817
KXB67326.1
KEGG: awo:Awo_c08160 2.0e-116 selB; selenocysteine-specific translation elongation factor SelB K03833; Psort location: Cytoplasmic, score: 9.97.
 
   
 0.815
KXB68269.1
KEGG: clc:Calla_1127 5.7e-78 cysteine desulfurase; K04487 cysteine desulfurase; Psort location: Cytoplasmic, score: 9.97.
   
 0.791
KXB68365.1
KEGG: cpy:Cphy_1489 8.4e-93 cysteine desulfurase; Psort location: Cytoplasmic, score: 9.97.
  
  0.772
KXB65632.1
Aminotransferase, class V; KEGG: dhd:Dhaf_3910 2.1e-71 cysteine desulfurase; Psort location: Cytoplasmic, score: 9.97.
  
  0.758
KXB67124.1
Putative cysteine desulfurase; KEGG: tsh:Tsac_1554 7.3e-78 class V aminotransferase; K04487 cysteine desulfurase; Psort location: Cytoplasmic, score: 9.97.
   
 0.706
Your Current Organism:
Peptoniphilus coxii
NCBI taxonomy Id: 755172
Other names: ATCC BAA-2106, CCUG 59622, JCM 16892, P. coxii, Peptoniphilus coxii Citron et al. 2013, Peptoniphilus sp. RMA 16757, strain RMA 16757
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