STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB67173.1MobA/MobL family protein; KEGG: snc:HMPREF0837_11442 6.8e-281 nic; nickase; Psort location: Cytoplasmic, score: 8.96. (567 aa)    
Predicted Functional Partners:
KXB67171.1
Hypothetical protein; KEGG: ddi:DDB_G0274493 1.9e-06 lig1; DNA ligase I; K10747 DNA ligase 1; Psort location: Cytoplasmic, score: 8.96.
 
     0.837
KXB67174.1
Hypothetical protein; KEGG: edi:EDI_048910 0.00080 intracellular protein transport protein USO1; Psort location: Cytoplasmic, score: 8.96.
 
     0.833
KXB67168.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.779
KXB67166.1
Resolvase protein; KEGG: lba:Lebu_0643 0.00023 ATP synthase F0 subunit beta; K02109 F-type H+-transporting ATPase subunit b; Psort location: Cytoplasmic, score: 8.96.
 
     0.738
KXB68290.1
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
  
 
 0.616
KXB67172.1
Hypothetical protein.
       0.575
KXB67075.1
UvrD/REP helicase; ATP-dependent DNA helicase.
  
 
 0.548
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
   
 
 0.492
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
   
 
  0.486
KXB67185.1
Hypothetical protein; KEGG: ral:Rumal_2514 8.1e-09 XRE family transcriptional regulator K00558.
  
     0.420
Your Current Organism:
Peptoniphilus coxii
NCBI taxonomy Id: 755172
Other names: ATCC BAA-2106, CCUG 59622, JCM 16892, P. coxii, Peptoniphilus coxii Citron et al. 2013, Peptoniphilus sp. RMA 16757, strain RMA 16757
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