STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB67181.1DNA-binding helix-turn-helix protein; KEGG: mla:Mlab_1603 1.8e-05 adenine deaminase K01486. (117 aa)    
Predicted Functional Partners:
KXB67180.1
KEGG: efc:EFAU004_02773 3.8e-17 DNA-directed RNA polymerase specialized sigma subunit; Psort location: Cytoplasmic, score: 8.96.
 
     0.774
KXB67179.1
Hypothetical protein; KEGG: smb:smi_1339 1.6e-27 pnpA; polyribonucleotide nucleotidyltransferase.
 
     0.773
KXB67176.1
Site-specific recombinase, phage integrase family; KEGG: bsr:I33_1800 3.8e-14 xerC; ATP-dependent protease HslV K03733; Psort location: Cytoplasmic, score: 8.96; Belongs to the 'phage' integrase family.
 
    0.767
KXB67178.1
DNA binding domain, excisionase family.
  
     0.757
cinA
Competence/damage-inducible protein CinA domain protein; KEGG: cco:CCC13826_0279 2.6e-13 fadD; long-chain-fatty-acid--CoA ligase K03743; Psort location: Cytoplasmic, score: 8.96; Belongs to the CinA family.
    
 0.754
KXB67182.1
Putative translation elongation factor G; KEGG: efu:HMPREF0351_10054 5.9e-60 fusA; protein-synthesizing GTPase K02355; Psort location: Cytoplasmic, score: 9.97.
  
     0.732
KXB65387.1
KEGG: txy:Thexy_1943 0. pyruvate ferredoxin/flavodoxin oxidoreductase K03737; Psort location: Cytoplasmic, score: 8.96.
  
 
  0.513
KXB65227.1
KEGG: fma:FMG_0385 0. pyruvate/ferredoxin oxidoreductase; K03737 putative pyruvate-flavodoxin oxidoreductase; Psort location: Cytoplasmic, score: 8.96.
  
 
  0.513
KXB65061.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
  0.410
Your Current Organism:
Peptoniphilus coxii
NCBI taxonomy Id: 755172
Other names: ATCC BAA-2106, CCUG 59622, JCM 16892, P. coxii, Peptoniphilus coxii Citron et al. 2013, Peptoniphilus sp. RMA 16757, strain RMA 16757
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