STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB66975.1Dinuclear metal center protein, YbgI family; KEGG: hip:CGSHiEE_02770 4.6e-14 seryl-tRNA synthetase; Psort location: Cytoplasmic, score: 8.96. (251 aa)    
Predicted Functional Partners:
KXB68458.1
Pyruvate kinase; KEGG: amt:Amet_4068 3.0e-145 pyruvate kinase; K00873 pyruvate kinase; Psort location: Cytoplasmic, score: 9.97.
 
 
  0.901
KXB66976.1
KEGG: cpf:CPF_2262 3.7e-28 hypothetical protein; K06967 tRNA (adenine22-N1)-methyltransferase; Psort location: Cytoplasmic, score: 8.96.
  
  
 0.899
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
 
   
 0.866
ribBA
GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.859
sigA
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
     
 0.824
KXB66986.1
Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.
 
     0.796
KXB66981.1
Putative transcriptional repressor CcpN; KEGG: ppo:PPM_2177 4.6e-37 yqzB; inosine-5'-monophosphate dehydrogenase IMP dehydrogenase; IMPDH; IMPD; Psort location: Cytoplasmic, score: 8.96.
       0.789
KXB66979.1
Putative dGTPase; KEGG: txy:Thexy_0822 2.7e-103 deoxyguanosinetriphosphate triphosphohydrolase-like protein; K01129 dGTPase; Psort location: Cytoplasmic, score: 9.97.
       0.786
glyQ
glycine--tRNA ligase, alpha subunit; KEGG: cst:CLOST_1771 2.1e-119 glyQ; glycine tRNA synthetase subunit alpha K01878; Psort location: Cytoplasmic, score: 9.97.
  
    0.786
era
Ribosome biogenesis GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
  
    0.785
Your Current Organism:
Peptoniphilus coxii
NCBI taxonomy Id: 755172
Other names: ATCC BAA-2106, CCUG 59622, JCM 16892, P. coxii, Peptoniphilus coxii Citron et al. 2013, Peptoniphilus sp. RMA 16757, strain RMA 16757
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