STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB66993.1YqeY-like protein; KEGG: efc:EFAU004_01997 4.7e-28 Glutamyl-tRNA(Gln) amidotransferase subunit E K09117; Psort location: Cytoplasmic, score: 9.97. (140 aa)    
Predicted Functional Partners:
rpsU
Ribosomal protein S21; KEGG: seh:SeHA_C3463 6.2e-10 rpsU; 30S ribosomal protein S21 K02970; Psort location: Cytoplasmic, score: 9.26; Belongs to the bacterial ribosomal protein bS21 family.
  
  
 0.952
KXB66991.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.616
KXB66992.1
Nodulation efficiency protein D; KEGG: bpu:BPUM_2272 4.7e-18 yqeZ; serine peptidase K07403; Psort location: CytoplasmicMembrane, score: 10.00.
       0.616
KXB66990.1
Hypothetical protein; KEGG: edi:EDI_189350 0.0016 transcription initiation factor TFIID subunit; Psort location: Cytoplasmic, score: 8.96.
       0.565
KXB66981.1
Putative transcriptional repressor CcpN; KEGG: ppo:PPM_2177 4.6e-37 yqzB; inosine-5'-monophosphate dehydrogenase IMP dehydrogenase; IMPDH; IMPD; Psort location: Cytoplasmic, score: 8.96.
       0.541
era
Ribosome biogenesis GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
  
    0.537
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
       0.523
KXB66987.1
KEGG: txy:Thexy_1499 1.0e-57 diacylglycerol kinase; K00901 diacylglycerol kinase; Psort location: CytoplasmicMembrane, score: 10.00.
       0.523
ybeY
Translation metalloprotein YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
       0.523
KXB66989.1
PhoH family protein; KEGG: ttu:TERTU_3875 7.8e-74 phosphate starvation-inducible protein PhoH family protein, ATPase K06217; Psort location: Cytoplasmic, score: 9.97.
       0.523
Your Current Organism:
Peptoniphilus coxii
NCBI taxonomy Id: 755172
Other names: ATCC BAA-2106, CCUG 59622, JCM 16892, P. coxii, Peptoniphilus coxii Citron et al. 2013, Peptoniphilus sp. RMA 16757, strain RMA 16757
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