STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB67060.1KEGG: ebe:B21_01129 1.1e-60 potD; potD, subunit of putrescine/spermidine ABC transporter K11069; Psort location: Periplasmic, score: 9.99. (347 aa)    
Predicted Functional Partners:
KXB67061.1
Putative spermidine/putrescine ABC transporter, permease protein PotC; KEGG: aoe:Clos_2538 4.0e-77 ornithine carbamoyltransferase K11070; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.999
KXB67062.1
Putative spermidine/putrescine ABC transporter, permease protein PotB; KEGG: ebe:B21_01131 7.7e-51 potB; potB, subunit of putrescine/spermidine ABC transporter K11071; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.998
potA
Putative spermidine/putrescine ABC transporter, ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
 
 0.998
KXB67064.1
KEGG: apb:SAR116_1706 1.6e-11 DNA-binding protein; Psort location: Cytoplasmic, score: 9.97.
     
 0.840
KXB67059.1
KEGG: apr:Apre_1498 2.6e-73 FAD-dependent pyridine nucleotide-disulfide oxidoreductase; K00362 nitrite reductase (NAD(P)H) large subunit; Psort location: Cytoplasmic, score: 9.97.
  
    0.683
engB
Ribosome biogenesis GTP-binding protein YsxC; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.
       0.585
KXB67065.1
Hypothetical protein.
       0.584
lon
Endopeptidase La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.
       0.584
KXB65067.1
RecF/RecN/SMC protein; KEGG: bce:BC1852 1.6e-34 exonuclease SbcC K03546; Psort location: Cytoplasmic, score: 8.96.
    
  0.559
clpP
ATP-dependent Clp endopeptidase, proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.
  
    0.498
Your Current Organism:
Peptoniphilus coxii
NCBI taxonomy Id: 755172
Other names: ATCC BAA-2106, CCUG 59622, JCM 16892, P. coxii, Peptoniphilus coxii Citron et al. 2013, Peptoniphilus sp. RMA 16757, strain RMA 16757
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