STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB67073.1Hypothetical protein; KEGG: scp:HMPREF0833_10874 3.4e-18 seryl-tRNA synthetase family protein. (69 aa)    
Predicted Functional Partners:
KXB67071.1
Hypothetical protein.
       0.766
KXB67072.1
KEGG: ccb:Clocel_2700 8.6e-52 L-lactate dehydrogenase; K00016 L-lactate dehydrogenase; Psort location: Cytoplasmic, score: 9.97; Belongs to the LDH/MDH superfamily.
  
    0.765
KXB67074.1
Copper-exporting ATPase; KEGG: tep:TepRe1_2040 3.3e-233 heavy metal translocating P-type ATPase K01533; Psort location: CytoplasmicMembrane, score: 10.00.
       0.651
tig
Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.
       0.616
KXB67075.1
UvrD/REP helicase; ATP-dependent DNA helicase.
       0.611
KXB67076.1
Hypothetical protein; KEGG: tbd:Tbd_0034 1.0e-06 DNA helicase/exodeoxyribonuclease V subunit B K01144; Psort location: Cytoplasmic, score: 8.96.
       0.611
KXB67077.1
KEGG: apr:Apre_0893 2.5e-54 RluA family pseudouridine synthase; K06179 23S rRNA pseudouridine955/2504/2580 synthase; Psort location: Cytoplasmic, score: 9.97.
       0.538
clpP
ATP-dependent Clp endopeptidase, proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.
       0.537
clpX
ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
       0.526
KXB67078.1
Hypothetical protein; KEGG: awo:Awo_c09900 0.00061 pabC2; aminodeoxychorismate lyase PabC2 K07082; Psort location: CytoplasmicMembrane, score: 9.82.
  
    0.444
Your Current Organism:
Peptoniphilus coxii
NCBI taxonomy Id: 755172
Other names: ATCC BAA-2106, CCUG 59622, JCM 16892, P. coxii, Peptoniphilus coxii Citron et al. 2013, Peptoniphilus sp. RMA 16757, strain RMA 16757
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