STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB67075.1UvrD/REP helicase; ATP-dependent DNA helicase. (947 aa)    
Predicted Functional Partners:
KXB67076.1
Hypothetical protein; KEGG: tbd:Tbd_0034 1.0e-06 DNA helicase/exodeoxyribonuclease V subunit B K01144; Psort location: Cytoplasmic, score: 8.96.
 
 
 0.997
KXB67074.1
Copper-exporting ATPase; KEGG: tep:TepRe1_2040 3.3e-233 heavy metal translocating P-type ATPase K01533; Psort location: CytoplasmicMembrane, score: 10.00.
       0.728
KXB67077.1
KEGG: apr:Apre_0893 2.5e-54 RluA family pseudouridine synthase; K06179 23S rRNA pseudouridine955/2504/2580 synthase; Psort location: Cytoplasmic, score: 9.97.
       0.726
KXB66647.1
KEGG: ttm:Tthe_2091 7.7e-186 ATP-dependent DNA helicase PcrA; K03657 DNA helicase II / ATP-dependent DNA helicase PcrA; Psort location: Cytoplasmic, score: 9.97.
 
 
0.708
KXB67090.1
UvrD/REP helicase; KEGG: ccl:Clocl_0472 6.1e-106 DNA/RNA helicase; K03657 DNA helicase II / ATP-dependent DNA helicase PcrA; Psort location: Cytoplasmic, score: 9.97.
 
 
0.651
recD2
Helicase, RecD/TraA family; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily.
  
 
 0.619
KXB67073.1
Hypothetical protein; KEGG: scp:HMPREF0833_10874 3.4e-18 seryl-tRNA synthetase family protein.
       0.611
KXB67071.1
Hypothetical protein.
       0.603
KXB67072.1
KEGG: ccb:Clocel_2700 8.6e-52 L-lactate dehydrogenase; K00016 L-lactate dehydrogenase; Psort location: Cytoplasmic, score: 9.97; Belongs to the LDH/MDH superfamily.
       0.603
KXB68460.1
DNA polymerase III, alpha subunit; KEGG: cdc:CD196_3172 0. dnaE; DNA polymerase III DnaE; K02337 DNA polymerase III subunit alpha; Psort location: Cytoplasmic, score: 9.97.
 
  
 0.575
Your Current Organism:
Peptoniphilus coxii
NCBI taxonomy Id: 755172
Other names: ATCC BAA-2106, CCUG 59622, JCM 16892, P. coxii, Peptoniphilus coxii Citron et al. 2013, Peptoniphilus sp. RMA 16757, strain RMA 16757
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