STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB66863.1KEGG: elm:ELI_1536 1.3e-62 RNA methyltransferase; K03215 23S rRNA (uracil1939-C5)-methyltransferase; Psort location: Cytoplasmic, score: 9.97; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (424 aa)    
Predicted Functional Partners:
KXB66552.1
Hypothetical protein; KEGG: seu:SEQ_0729 9.1e-26 RNA methyltransferase; K03215 23S rRNA (uracil1939-C5)-methyltransferase; Psort location: Cytoplasmic, score: 8.96.
 
      0.873
KXB66864.1
S1 RNA binding domain protein; KEGG: mai:MICA_2002 3.4e-25 3-deoxy-7-phosphoheptulonate synthase K00243; Psort location: Cytoplasmic, score: 8.96; Belongs to the CvfB family.
       0.776
KXB66865.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.776
KXB66866.1
Hypothetical protein.
       0.553
KXB66862.1
Hypothetical protein.
       0.539
KXB66584.1
Hypothetical protein; KEGG: spb:M28_Spy1090 6.1e-35 tRNA (uracil-5-)-methyltransferase K03215.
 
      0.527
KXB65248.1
Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
     0.480
KXB65145.1
DNA repair protein RecN; May be involved in recombinational repair of damaged DNA.
  
    0.462
KXB65007.1
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
 
     0.441
rsmI
S-adenosylmethionine-dependent methyltransferase, YraL family; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
 
  
 0.437
Your Current Organism:
Peptoniphilus coxii
NCBI taxonomy Id: 755172
Other names: ATCC BAA-2106, CCUG 59622, JCM 16892, P. coxii, Peptoniphilus coxii Citron et al. 2013, Peptoniphilus sp. RMA 16757, strain RMA 16757
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