STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB66864.1S1 RNA binding domain protein; KEGG: mai:MICA_2002 3.4e-25 3-deoxy-7-phosphoheptulonate synthase K00243; Psort location: Cytoplasmic, score: 8.96; Belongs to the CvfB family. (268 aa)    
Predicted Functional Partners:
KXB66865.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.801
KXB66863.1
KEGG: elm:ELI_1536 1.3e-62 RNA methyltransferase; K03215 23S rRNA (uracil1939-C5)-methyltransferase; Psort location: Cytoplasmic, score: 9.97; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.776
KXB66866.1
Hypothetical protein.
       0.553
KXB66862.1
Hypothetical protein.
       0.539
KXB66868.1
GTP-binding protein TypA; KEGG: pmc:P9515_08211 5.2e-180 typA; tyrosine binding protein K06207; Psort location: CytoplasmicMembrane, score: 7.88.
  
    0.434
KXB66867.1
YbaK/proline--tRNA ligase associated domain protein; KEGG: pva:Pvag_0024 6.4e-24 prolyl-tRNA synthetase; Psort location: Cytoplasmic, score: 9.97.
       0.418
KXB66861.1
KEGG: efu:HMPREF0351_12109 6.9e-05 TetR/AcrR family transcriptional regulator; Psort location: Cytoplasmic, score: 8.96.
       0.401
Your Current Organism:
Peptoniphilus coxii
NCBI taxonomy Id: 755172
Other names: ATCC BAA-2106, CCUG 59622, JCM 16892, P. coxii, Peptoniphilus coxii Citron et al. 2013, Peptoniphilus sp. RMA 16757, strain RMA 16757
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