STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hisShistidine--tRNA ligase; KEGG: ctc:CTC01958 1.7e-140 hisS; histidyl-tRNA synthetase K01892; Psort location: Cytoplasmic, score: 10.00. (436 aa)    
Predicted Functional Partners:
aspS
aspartate--tRNA ligase; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.
  
  
 0.871
thrS
threonine--tRNA ligase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr).
  
 
 0.841
KXB66596.1
RNA methyltransferase, TrmH family; KEGG: bcz:BCZK4305 2.8e-37 spoU; 23S rRNA methyltransferase K03437; Psort location: Cytoplasmic, score: 9.97; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
  
   0.811
KXB67326.1
KEGG: awo:Awo_c08160 2.0e-116 selB; selenocysteine-specific translation elongation factor SelB K03833; Psort location: Cytoplasmic, score: 9.97.
   
 0.799
KXB66598.1
KEGG: aoe:Clos_1975 3.6e-101 TrkH family potassium uptake protein K03498; Psort location: CytoplasmicMembrane, score: 10.00.
       0.782
KXB66597.1
TrkA protein; KEGG: suq:HMPREF0772_12145 1.3e-34 ktrA; Trk family potassium (K+) transporter, NAD+ binding protein K03499; Psort location: Cytoplasmic, score: 8.96.
       0.779
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
  
 0.687
lysS
lysine--tRNA ligase; KEGG: faa:HMPREF0389_00147 8.0e-175 lysine--tRNA ligase; K04567 lysyl-tRNA synthetase, class II; Psort location: Cytoplasmic, score: 10.00; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
 
 0.683
glyQ
glycine--tRNA ligase, alpha subunit; KEGG: cst:CLOST_1771 2.1e-119 glyQ; glycine tRNA synthetase subunit alpha K01878; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.664
alaS
alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
 
 0.640
Your Current Organism:
Peptoniphilus coxii
NCBI taxonomy Id: 755172
Other names: ATCC BAA-2106, CCUG 59622, JCM 16892, P. coxii, Peptoniphilus coxii Citron et al. 2013, Peptoniphilus sp. RMA 16757, strain RMA 16757
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