STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB66597.1TrkA protein; KEGG: suq:HMPREF0772_12145 1.3e-34 ktrA; Trk family potassium (K+) transporter, NAD+ binding protein K03499; Psort location: Cytoplasmic, score: 8.96. (222 aa)    
Predicted Functional Partners:
KXB66598.1
KEGG: aoe:Clos_1975 3.6e-101 TrkH family potassium uptake protein K03498; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.994
KXB66596.1
RNA methyltransferase, TrmH family; KEGG: bcz:BCZK4305 2.8e-37 spoU; 23S rRNA methyltransferase K03437; Psort location: Cytoplasmic, score: 9.97; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
       0.814
hisS
histidine--tRNA ligase; KEGG: ctc:CTC01958 1.7e-140 hisS; histidyl-tRNA synthetase K01892; Psort location: Cytoplasmic, score: 10.00.
       0.779
KXB67284.1
Cation transport protein; KEGG: ssr:SALIVB_0283 8.2e-79 DNA polymerase IV K03498; Psort location: CytoplasmicMembrane, score: 10.00.
  
 
 0.759
cinA
Competence/damage-inducible protein CinA domain protein; KEGG: cco:CCC13826_0279 2.6e-13 fadD; long-chain-fatty-acid--CoA ligase K03743; Psort location: Cytoplasmic, score: 8.96; Belongs to the CinA family.
    
  0.725
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
       0.696
rpmI
Ribosomal protein L35; Psort location: Cytoplasmic, score: 9.26; Belongs to the bacterial ribosomal protein bL35 family.
       0.664
infC
Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.
       0.647
KXB65111.1
Putative ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
   0.578
purD
KEGG: faa:HMPREF0389_00494 0. phosphoribosylformylglycinamidine synthase; K01952 phosphoribosylformylglycinamidine synthase; Psort location: Cytoplasmic, score: 9.97; Belongs to the GARS family.
  
  
 0.576
Your Current Organism:
Peptoniphilus coxii
NCBI taxonomy Id: 755172
Other names: ATCC BAA-2106, CCUG 59622, JCM 16892, P. coxii, Peptoniphilus coxii Citron et al. 2013, Peptoniphilus sp. RMA 16757, strain RMA 16757
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