STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB66607.1RNAse H domain protein, YqgF family; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. (138 aa)    
Predicted Functional Partners:
KXB66609.1
Hypothetical protein.
  
    0.936
KXB66608.1
4Fe-4S binding domain protein; KEGG: ova:OBV_17380 2.0e-18 aldo-keto reductase; Psort location: Cytoplasmic, score: 9.97.
       0.815
alaS
alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
 
    0.798
KXB66604.1
O-methyltransferase; KEGG: cpe:CPE1772 4.2e-43 O-methyltransferase; K00599; Psort location: Cytoplasmic, score: 9.97.
 
     0.662
rnj
Hypothetical protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.
       0.658
KXB66606.1
Transcriptional regulator, Fur family; KEGG: mct:MCR_0333 5.8e-14 fur; ferric uptake regulation protein Fur K03711; Psort location: Cytoplasmic, score: 9.97; Belongs to the Fur family.
       0.658
KXB65180.1
Hypothetical protein; KEGG: say:TPY_3350 2.8e-07 ruvX; Holliday junction resolvase; K07447 putative holliday junction resolvase; Psort location: Cytoplasmic, score: 8.96.
  
    0.620
KXB66603.1
Peptidase, U32 family; KEGG: fma:FMG_0634 3.8e-136 collagenase family protease; K08303 putative protease; Psort location: Cytoplasmic, score: 8.96.
       0.607
udk
Uridine kinase; KEGG: bbe:BBR47_19080 5.3e-68 udk; uridine kinase K00876; Psort location: Cytoplasmic, score: 9.97.
       0.581
miaA
tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.
  
    0.513
Your Current Organism:
Peptoniphilus coxii
NCBI taxonomy Id: 755172
Other names: ATCC BAA-2106, CCUG 59622, JCM 16892, P. coxii, Peptoniphilus coxii Citron et al. 2013, Peptoniphilus sp. RMA 16757, strain RMA 16757
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