STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB66612.1Putative HTH-type transcriptional regulator CymR; KEGG: hmc:HYPMC_1094 5.9e-17 Rrf2 family transcriptional regulator K04487; Psort location: Cytoplasmic, score: 8.96. (132 aa)    
Predicted Functional Partners:
KXB66611.1
Putative sporulation integral membrane protein YtvI; KEGG: tbd:Tbd_2668 7.6e-29 phosphoribosylaminoimidazole-succinocarboxamide synthase K01923; Psort location: CytoplasmicMembrane, score: 10.00.
       0.809
KXB68269.1
KEGG: clc:Calla_1127 5.7e-78 cysteine desulfurase; K04487 cysteine desulfurase; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.650
KXB67124.1
Putative cysteine desulfurase; KEGG: tsh:Tsac_1554 7.3e-78 class V aminotransferase; K04487 cysteine desulfurase; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.644
leuS
leucine--tRNA ligase; KEGG: aoe:Clos_2587 0. leuS; leucyl-tRNA synthetase; K01869 leucyl-tRNA synthetase; Psort location: Cytoplasmic, score: 9.97; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.637
KXB66615.1
ATPase, AAA family; KEGG: atm:ANT_00900 6.8e-107 putative ATPase K07478; Psort location: Cytoplasmic, score: 9.97.
       0.595
alaS
alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
       0.594
asnS
asparagine--tRNA ligase; KEGG: cth:Cthe_0070 1.3e-176 asnC; asparaginyl-tRNA synthetase K01893; Psort location: Cytoplasmic, score: 10.00.
       0.586
nrdR
Putative transcriptional regulator NrdR; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes.
       0.583
KXB68579.1
SUF system FeS assembly protein, NifU family; KEGG: hbo:Hbor_34450 2.2e-05 cysteine desulfurase; Psort location: Cytoplasmic, score: 8.96.
  
  
 0.536
KXB66609.1
Hypothetical protein.
       0.521
Your Current Organism:
Peptoniphilus coxii
NCBI taxonomy Id: 755172
Other names: ATCC BAA-2106, CCUG 59622, JCM 16892, P. coxii, Peptoniphilus coxii Citron et al. 2013, Peptoniphilus sp. RMA 16757, strain RMA 16757
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