STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB65367.1Flavin reductase; KEGG: pfc:PflA506_2460 4.4e-48 NADPH-dependent FMN reductase; Psort location: Cytoplasmic, score: 9.26. (181 aa)    
Predicted Functional Partners:
KXB67218.1
NMT1/THI5-like protein; KEGG: abu:Abu_1637 9.7e-14 two-component sensor histidine kinase.
  
 
  0.742
KXB66559.1
Hypothetical protein.
  
 0.661
KXB66367.1
Hypothetical protein.
  
 0.661
KXB65890.1
Hypothetical protein.
  
 0.661
KXB67219.1
KEGG: sgo:SGO_2099 2.4e-47 ABC transporter ATP-binding protein K15600; Psort location: CytoplasmicMembrane, score: 7.88.
  
 
 0.628
KXB67298.1
Putative NADH oxidase; KEGG: clj:CLJU_c30750 9.6e-124 enoate reductase; Psort location: Cytoplasmic, score: 9.97.
    
 0.625
KXB67217.1
KEGG: apb:SAR116_1967 3.0e-33 ABC transporter permease K15599; Psort location: CytoplasmicMembrane, score: 10.00.
  
 
  0.611
rnr
Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
  
    0.599
smpB
SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]
       0.574
KXB65077.1
KEGG: cbt:CLH_1228 9.0e-57 ribF; bifunctional riboflavin kinase/FMN adenylyltransferase; K11753 riboflavin kinase / FMN adenylyltransferase; Psort location: Cytoplasmic, score: 9.97; Belongs to the ribF family.
    
 0.563
Your Current Organism:
Peptoniphilus coxii
NCBI taxonomy Id: 755172
Other names: ATCC BAA-2106, CCUG 59622, JCM 16892, P. coxii, Peptoniphilus coxii Citron et al. 2013, Peptoniphilus sp. RMA 16757, strain RMA 16757
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