STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB64994.1Prepilin-type cleavage/methylation protein; KEGG: cco:CCC13826_1487 0.0022 carbamoyl-phosphate synthase large subunit. (122 aa)    
Predicted Functional Partners:
KXB64992.1
Putative general secretory pathway protein E; KEGG: cco:CCC13826_1231 7.9e-81 L(+)-tartrate dehydratase subunit beta (L-TTD beta) K02454; Psort location: Cytoplasmic, score: 9.97.
 
 0.992
KXB64993.1
Bacterial type II secretion system protein F domain protein; KEGG: pfe:PSF113_5005 4.5e-30 pilC; protein PilC K02653; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.982
KXB64995.1
Bacterial peptidase A24 protein; KEGG: cpo:COPRO5265_1030 1.9e-22 leader peptidase PilD; K02654 leader peptidase (prepilin peptidase) / N-methyltransferase; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 0.916
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
     
 0.876
KXB64990.1
DNA protecting protein DprA; KEGG: pfe:PSF113_0071 7.1e-41 smf; protein Smf K04096; Psort location: Cytoplasmic, score: 8.96.
  
  
 0.825
KXB64996.1
Putative general secretion pathway protein L; Psort location: Cytoplasmic, score: 8.96.
  
  
 0.728
KXB66591.1
Prepilin-type cleavage/methylation protein.
  
 
 0.647
KXB64989.1
Mg chelatase-like protein; KEGG: chu:CHU_0354 5.7e-126 ch1I; magnesium chelatase subunit ChlI K07391; Psort location: Cytoplasmic, score: 9.97.
 
     0.616
KXB64988.1
TIGR00252 family protein; KEGG: sat:SYN_00772 1.0e-16 endonuclease K07460; Psort location: Cytoplasmic, score: 8.96; Belongs to the UPF0102 family.
 
     0.613
KXB64997.1
Hypothetical protein; KEGG: tep:TepRe1_0239 7.7e-51 Thiamine-phosphate kinase; Psort location: Cytoplasmic, score: 8.96.
       0.605
Your Current Organism:
Peptoniphilus coxii
NCBI taxonomy Id: 755172
Other names: ATCC BAA-2106, CCUG 59622, JCM 16892, P. coxii, Peptoniphilus coxii Citron et al. 2013, Peptoniphilus sp. RMA 16757, strain RMA 16757
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