STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB65067.1RecF/RecN/SMC protein; KEGG: bce:BC1852 1.6e-34 exonuclease SbcC K03546; Psort location: Cytoplasmic, score: 8.96. (479 aa)    
Predicted Functional Partners:
KXB65068.1
Ser/Thr phosphatase family protein; KEGG: bce:BC1857 7.3e-39 exonuclease SbcD K03547; Psort location: Cytoplasmic, score: 8.96.
 
 0.999
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
 0.992
KXB66659.1
KEGG: efc:EFAU004_02529 1.3e-09 Ser/Thr protein phosphatase family protein; Psort location: Cytoplasmic, score: 8.96.
  
 0.989
KXB65065.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
  
 0.974
KXB65066.1
Hypothetical protein; KEGG: edi:EDI_253270 0.0011 DNA double-strand break repair Rad50 ATPase K06674.
 
     0.952
recA
RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 0.931
KXB67335.1
D-proline reductase, PrdA proprotein; KEGG: cdl:CDR20291_3100 2.2e-69 hypothetical protein; K10795 D-proline reductase (dithiol) PrdD; Psort location: Cytoplasmic, score: 9.97.
   
  0.884
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
  
 0.827
KXB64882.1
NurA domain protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.800
KXB64884.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.800
Your Current Organism:
Peptoniphilus coxii
NCBI taxonomy Id: 755172
Other names: ATCC BAA-2106, CCUG 59622, JCM 16892, P. coxii, Peptoniphilus coxii Citron et al. 2013, Peptoniphilus sp. RMA 16757, strain RMA 16757
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