STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB65145.1DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. (555 aa)    
Predicted Functional Partners:
xseA
Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.
 
   
 0.899
KXB65138.1
Pseudouridylate synthase; KEGG: hor:Hore_07230 2.0e-59 ribosomal large subunit pseudouridine synthase B K06178; Psort location: Cytoplasmic, score: 9.97; Belongs to the pseudouridine synthase RsuA family.
 
     0.841
cmk
Cytidylate kinase; KEGG: txy:Thexy_1236 4.4e-48 cytidylate kinase; K00945 cytidylate kinase; Psort location: Cytoplasmic, score: 9.97.
 
     0.837
KXB65147.1
Geranyltranstransferase family protein; KEGG: ccb:Clocel_1936 3.0e-42 polyprenyl synthetase; K13789 geranylgeranyl diphosphate synthase, type II; Psort location: Cytoplasmic, score: 9.97.
     
 0.824
KXB65142.1
KEGG: baz:BAMTA208_19905 4.0e-118 pdp; pyrimidine-nucleoside phosphorylase K00756; Psort location: Cytoplasmic, score: 8.96.
     
 0.818
KXB65144.1
Hydrolase, NUDIX family; KEGG: fma:FMG_0836 5.9e-37 putative ADP-ribose pyrophosphatase; K01515 ADP-ribose pyrophosphatase; Psort location: Cytoplasmic, score: 9.97.
     
 0.818
KXB65146.1
Ribosomal RNA large subunit methyltransferase J; KEGG: tte:TTE1299 3.9e-72 rRNA methylase; K06442 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase; Psort location: Cytoplasmic, score: 8.96.
  
    0.816
ispH
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
       0.814
KXB65134.1
Acyltransferase; KEGG: apr:Apre_1020 5.2e-29 phospholipid/glycerol acyltransferase; K00655 1-acyl-sn-glycerol-3-phosphate acyltransferase; Psort location: Cytoplasmic, score: 8.96.
       0.814
KXB65136.1
Flavoprotein family protein; KEGG: bao:BAMF_2804 2.2e-62 ytfP; NAD(FAD) dehydrogenase K07007; Psort location: Cytoplasmic, score: 9.97.
       0.814
Your Current Organism:
Peptoniphilus coxii
NCBI taxonomy Id: 755172
Other names: ATCC BAA-2106, CCUG 59622, JCM 16892, P. coxii, Peptoniphilus coxii Citron et al. 2013, Peptoniphilus sp. RMA 16757, strain RMA 16757
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