STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEA42812.1KEGG: afl:Aflv_2505 hypothetical protein; SPTR: Predicted protein. (282 aa)    
Predicted Functional Partners:
AEA42813.1
KEGG: chu:CHU_1857 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.498
AEA42811.1
Hypothetical protein; KEGG: hch:HCH_03106 heat repeat-containing protein; SPTR: Protein containing HEAT repeats.
       0.468
AEA42814.1
Transcription activator effector binding protein; COGs: COG3708 conserved hypothetical protein; InterPro IPR010499; KEGG: coc:Coch_1918 transcription activator effector binding; PFAM: Bacterial transcription activator, effector binding; SPTR: Transcription activator effector binding; PFAM: Bacterial transcription activator, effector binding domain.
       0.429
Your Current Organism:
Fluviicola taffensis
NCBI taxonomy Id: 755732
Other names: CFB group bacterium RW262, F. taffensis DSM 16823, Fluviicola taffensis DSM 16823, Fluviicola taffensis RW262, Fluviicola taffensis str. DSM 16823, Fluviicola taffensis strain DSM 16823
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.