STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEA43232.1UPF0313 protein ygiQ; COGs: COG1032 Fe-S oxidoreductase; HAMAP: UPF0313 protein ygiQ; InterPro IPR013704:IPR006638; KEGG: sli:Slin_1403 radical SAM domain protein; PFAM: Radical SAM N-terminal; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM domain protein; PFAM: Radical SAM superfamily; Radical SAM N-terminal. (645 aa)    
Predicted Functional Partners:
AEA45102.1
COGs: COG3278 Cbb3-type cytochrome oxidase subunit 1; InterPro IPR000883:IPR003468:IPR004677; KEGG: chu:CHU_1138 putative bifunctional cbb3-type cytochrome c oxidase subunit I/II; PFAM: Cytochrome c oxidase, monohaem subunit/FixO; Cytochrome c oxidase, subunit I; PRIAM: Cytochrome-c oxidase; SPTR: Cytochrome c oxidase, cbb3-type; TIGRFAM: Cytochrome c oxidase cbb3-type, subunit I; Cytochrome c oxidase, monohaem subunit/FixO; PFAM: Cytochrome C oxidase, mono-heme subunit/FixO; Cytochrome C and Quinol oxidase polypeptide I; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; cytochrome [...]
   
  
 0.464
AEA43233.1
Hypothetical protein; KEGG: pfh:PFHG_01649 conserved hypothetical protein; SPTR: OppA2.
       0.437
AEA43234.1
MORN variant repeat-containing protein; InterPro IPR011652; KEGG: chu:CHU_2455 glucosyltransferase-S; PFAM: MORN variant; SPTR: Putative uncharacterized protein; PFAM: MORN repeat variant.
       0.437
Your Current Organism:
Fluviicola taffensis
NCBI taxonomy Id: 755732
Other names: CFB group bacterium RW262, F. taffensis DSM 16823, Fluviicola taffensis DSM 16823, Fluviicola taffensis RW262, Fluviicola taffensis str. DSM 16823, Fluviicola taffensis strain DSM 16823
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