STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEA44125.1KEGG: cpi:Cpin_4213 hypothetical protein; SPTR: Putative uncharacterized protein. (282 aa)    
Predicted Functional Partners:
AEA44126.1
KEGG: cph:Cpha266_1708 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Reverse transcriptase (RNA-dependent DNA polymerase).
      0.773
AEA44127.1
Zinc finger, CHC2-family protein; COGs: COG0358 DNA primase; InterPro IPR002694; KEGG: cph:Cpha266_1709 zinc finger, CHC2-family protein; SPTR: Zinc finger CHC2-family protein; PFAM: CHC2 zinc finger; DNA primase catalytic core, N-terminal domain.
       0.773
AEA44128.1
KEGG: cpi:Cpin_3191 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.487
AEA44129.1
KEGG: fps:FP1558 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.484
cas2
CRISPR-associated protein, Cas2 family; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
   
 
 0.483
Your Current Organism:
Fluviicola taffensis
NCBI taxonomy Id: 755732
Other names: CFB group bacterium RW262, F. taffensis DSM 16823, Fluviicola taffensis DSM 16823, Fluviicola taffensis RW262, Fluviicola taffensis str. DSM 16823, Fluviicola taffensis strain DSM 16823
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.