Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEA44125.1KEGG: cpi:Cpin_4213 hypothetical protein; SPTR: Putative uncharacterized protein. (282 aa)    
Predicted Functional Partners:
AEA44127.1
Zinc finger, CHC2-family protein; COGs: COG0358 DNA primase; InterPro IPR002694; KEGG: cph:Cpha266_1709 zinc finger, CHC2-family protein; SPTR: Zinc finger CHC2-family protein; PFAM: CHC2 zinc finger; DNA primase catalytic core, N-terminal domain.
     
 0.775
AEA44126.1
KEGG: cph:Cpha266_1708 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Reverse transcriptase (RNA-dependent DNA polymerase).
       0.773
AEA44128.1
KEGG: cpi:Cpin_3191 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.487
AEA44129.1
KEGG: fps:FP1558 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.484
Your Current Organism:
Fluviicola taffensis
NCBI taxonomy Id: 755732
Other names: CFB group bacterium RW262, F. taffensis DSM 16823, Fluviicola taffensis DSM 16823, Fluviicola taffensis RW262, Fluviicola taffensis str. DSM 16823, Fluviicola taffensis strain DSM 16823
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