STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY57700.1RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR013249: IPR014284; KEGG: psl:Psta_3005 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; TIGRFAM: RNA polymerase sigma factor, sigma-70 family. (191 aa)    
Predicted Functional Partners:
ADY60265.1
Amidohydrolase 2; COGs: COG1904 Glucuronate isomerase; KEGG: plm:Plim_2160 amidohydrolase 2; SPTR: Putative uncharacterized protein; PFAM: Glucuronate isomerase.
  
     0.753
ADY58879.1
InterPro IPR013097; KEGG: psl:Psta_3643 stress responsive alpha-beta barrel domain protein; PFAM: Stress responsive alpha-beta barrel; SPTR: Putative uncharacterized protein; PFAM: Stress responsive A/B Barrel Domain.
  
     0.678
ADY58815.1
KEGG: plm:Plim_2781 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.642
ADY57715.1
KEGG: psl:Psta_3949 transmembrane prediction; SPTR: Putative uncharacterized protein; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
     0.640
ADY61615.1
InterPro IPR011521; KEGG: plm:Plim_1186 YTV domain protein; PFAM: YTV; SPTR: YTV domain protein; PFAM: YTV.
  
     0.637
ADY60048.1
KEGG: plm:Plim_3249 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.632
ADY60036.1
Prenyltransferase/squalene oxidase; InterPro IPR001330; KEGG: plm:Plim_0306 A-macroglobulin complement component; PFAM: Prenyltransferase/squalene oxidase; SPTR: Putative uncharacterized protein.
  
     0.627
ADY57779.1
InterPro IPR011521; KEGG: plm:Plim_0937 YTV domain protein; PFAM: YTV; SPTR: Putative uncharacterized protein; PFAM: YTV.
  
     0.624
ADY57916.1
InterPro IPR000182; KEGG: plm:Plim_1970 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family.
  
     0.593
ADY58863.1
InterPro IPR001000; KEGG: plm:Plim_3847 glycoside hydrolase family 10; PFAM: Glycoside hydrolase, family 10; SPTR: Glycoside hydrolase family 10; PFAM: Glycosyl hydrolase family 10.
  
     0.572
Your Current Organism:
Rubinisphaera brasiliensis
NCBI taxonomy Id: 756272
Other names: Planctomyces brasiliensis ATCC 49424, Planctomyces brasiliensis DSM 5305, Planctomyces brasiliensis str. DSM 5305, Planctomyces brasiliensis strain DSM 5305, R. brasiliensis DSM 5305, Rubinisphaera brasiliensis DSM 5305
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