STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY57746.1UPF0365 protein; COGs: COG4864 conserved hypothetical protein; HAMAP: UPF0365 protein; KEGG: plm:Plim_0858 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: SigmaW regulon antibacterial. (354 aa)    
Predicted Functional Partners:
ADY57745.1
Protein of unknown function DUF107; COGs: COG1030 Membrane-bound serine protease (ClpP class); InterPro IPR002810; KEGG: plm:Plim_0857 protein of unknown function DUF107; PFAM: Nodulation efficiency, NfeD; SPTR: YqeZ; PFAM: NfeD-like.
 
    0.923
ADY59834.1
Protein of unknown function DUF107; COGs: COG1030 Membrane-bound serine protease (ClpP class); InterPro IPR002810; KEGG: plm:Plim_0730 protein of unknown function DUF107; PFAM: Nodulation efficiency, NfeD; SPTR: Putative uncharacterized protein.
 
    0.917
ADY57747.1
KEGG: plm:Plim_0859 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.553
serC
Phosphoserine aminotransferase apoenzyme; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.
   
    0.463
ADY57748.1
COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: plm:Plim_4196 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1; PFAM: Glycosyl transferases group 1.
       0.434
Your Current Organism:
Rubinisphaera brasiliensis
NCBI taxonomy Id: 756272
Other names: Planctomyces brasiliensis ATCC 49424, Planctomyces brasiliensis DSM 5305, Planctomyces brasiliensis str. DSM 5305, Planctomyces brasiliensis strain DSM 5305, R. brasiliensis DSM 5305, Rubinisphaera brasiliensis DSM 5305
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