STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY58148.1KEGG: pan:PODANSg4484 hypothetical protein; SPTR: Predicted CDS Pa_1_19860. (225 aa)    
Predicted Functional Partners:
ADY58149.1
Peptidase M50; InterPro IPR008915; KEGG: plm:Plim_1523 peptidase M50; PFAM: Peptidase M50; SPTR: Putative uncharacterized protein; PFAM: Peptidase family M50.
       0.508
ADY58147.1
Transposase IS116/IS110/IS902 family protein; COGs: COG3547 Transposase and inactivated derivatives; InterPro IPR003346; KEGG: hvo:HVO_A0128 transposase (ISH18); PFAM: Transposase, IS116/IS110/IS902; SPTR: Transposase IS1111A/IS1328/IS1533 family protein; PFAM: Transposase IS116/IS110/IS902 family; Transposase.
       0.403
Your Current Organism:
Rubinisphaera brasiliensis
NCBI taxonomy Id: 756272
Other names: Planctomyces brasiliensis ATCC 49424, Planctomyces brasiliensis DSM 5305, Planctomyces brasiliensis str. DSM 5305, Planctomyces brasiliensis strain DSM 5305, R. brasiliensis DSM 5305, Rubinisphaera brasiliensis DSM 5305
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.