STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY59274.1COGs: COG3659 Carbohydrate-selective porin; InterPro IPR007049; KEGG: rba:RB9508 hypothetical protein; PFAM: Carbohydrate-selective porin OprB; SPTR: Putative uncharacterized protein; PFAM: Carbohydrate-selective porin, OprB family; Belongs to the OprB family. (461 aa)    
Predicted Functional Partners:
ADY60265.1
Amidohydrolase 2; COGs: COG1904 Glucuronate isomerase; KEGG: plm:Plim_2160 amidohydrolase 2; SPTR: Putative uncharacterized protein; PFAM: Glucuronate isomerase.
  
     0.664
ADY61825.1
Signal peptide-domain containing protein; InterPro IPR012902; KEGG: rba:RB11016 signal peptide; SPTR: Putative uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; Protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain.
  
     0.655
ADY61523.1
Laminin G sub domain 2; InterPro IPR012680: IPR001791: IPR006558; KEGG: rba:RB10999 cycloinulo-oligosaccharide fructanotransferase; PFAM: Laminin G, subdomain 2; SMART: LamG-like jellyroll fold; Laminin G; SPTR: Probable cycloinulo-oligosaccharide fructanotransferase; PFAM: Laminin G domain.
  
     0.637
ADY61824.1
Protein of unknown function DUF214; COGs: COG0577 ABC-type antimicrobial peptide transport system permease component; InterPro IPR003838; KEGG: rba:RB11027 ABC transporter membrane protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: Probable ABC transport system integral membrane protein; PFAM: Predicted permease.
  
     0.632
ADY59840.1
KEGG: plm:Plim_3850 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Uncharacterised protein family (UPF0104).
  
     0.620
ADY59824.1
Hypothetical protein; KEGG: rba:RB9513 mu-protocadherin-putative cell-suface protein; SPTR: Probable mu-protocadherin-putative cell-suface protein.
  
     0.609
ADY57884.1
KEGG: plm:Plim_2507 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.605
ADY60602.1
KEGG: rba:RB7871 signal peptide; SPTR: Putative uncharacterized protein; PFAM: Neutral/alkaline non-lysosomal ceramidase.
  
     0.596
ADY58999.1
InterPro IPR013148: IPR001362; KEGG: rba:RB5832 hypothetical protein; PFAM: Glycosyl hydrolases family 32, N-terminal; SMART: Glycoside hydrolase, family 32; SPTR: Putative uncharacterized protein; PFAM: Glycosyl hydrolases family 32 N-terminal domain.
  
   
 0.580
ADY60704.1
KEGG: plm:Plim_0034 biotin apo-protein ligase-related protein; SPTR: Biotin apo-protein ligase-related protein; PFAM: Biotin-protein ligase, N terminal.
  
     0.565
Your Current Organism:
Rubinisphaera brasiliensis
NCBI taxonomy Id: 756272
Other names: Planctomyces brasiliensis ATCC 49424, Planctomyces brasiliensis DSM 5305, Planctomyces brasiliensis str. DSM 5305, Planctomyces brasiliensis strain DSM 5305, R. brasiliensis DSM 5305, Rubinisphaera brasiliensis DSM 5305
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