ADY59300.1 protein (Rubinisphaera brasiliensis)

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second shell of interactors

Node Content

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Edges:

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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co-expression

protein homology

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Score

ADY59300.1

Hypothetical protein; KEGG: ssp:SSP2408 sulfite reductase flavoprotein subunit; SPTR: Sulfite reductase flavoprotein subunit. (135 aa)

Predicted Functional Partners:

ADY59299.1

0.505

ADY59301.1

0.495

Your Current Organism:

Rubinisphaera brasiliensis

NCBI taxonomy Id: 756272
Other names: Planctomyces brasiliensis ATCC 49424, Planctomyces brasiliensis DSM 5305, Planctomyces brasiliensis str. DSM 5305, Planctomyces brasiliensis strain DSM 5305, R. brasiliensis DSM 5305, Rubinisphaera brasiliensis DSM 5305

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADY59299.1	ADY59300.1	Plabr_1688	Plabr_1689	KEGG: bfo:BRAFLDRAFT_128658 hypothetical protein; SPTR: Putative uncharacterized protein.	Hypothetical protein; KEGG: ssp:SSP2408 sulfite reductase flavoprotein subunit; SPTR: Sulfite reductase flavoprotein subunit.	0.505
ADY59300.1	ADY59299.1	Plabr_1689	Plabr_1688	Hypothetical protein; KEGG: ssp:SSP2408 sulfite reductase flavoprotein subunit; SPTR: Sulfite reductase flavoprotein subunit.	KEGG: bfo:BRAFLDRAFT_128658 hypothetical protein; SPTR: Putative uncharacterized protein.	0.505
ADY59300.1	ADY59301.1	Plabr_1689	Plabr_1690	Hypothetical protein; KEGG: ssp:SSP2408 sulfite reductase flavoprotein subunit; SPTR: Sulfite reductase flavoprotein subunit.	Glycoside hydrolase family 5; InterPro IPR001547; KEGG: cai:Caci_6685 cellulose-binding family II; PFAM: Glycoside hydrolase, family 5; SPTR: Glycoside hydrolase family 5; PFAM: Cellulase (glycosyl hydrolase family 5).	0.495
ADY59301.1	ADY59300.1	Plabr_1690	Plabr_1689	Glycoside hydrolase family 5; InterPro IPR001547; KEGG: cai:Caci_6685 cellulose-binding family II; PFAM: Glycoside hydrolase, family 5; SPTR: Glycoside hydrolase family 5; PFAM: Cellulase (glycosyl hydrolase family 5).	Hypothetical protein; KEGG: ssp:SSP2408 sulfite reductase flavoprotein subunit; SPTR: Sulfite reductase flavoprotein subunit.	0.495

Network Stats

number of nodes:

3

number of edges:

2

average node degree:

1.33

avg. local clustering coefficient:

0.667

expected number of edges:

2

PPI enrichment p-value:

0.526

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
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Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006431

methionyl-tRNA aminoacylation

2 of 3

3.31

1.18

0.0077

GO:1901838

Positive regulation of transcription of nucleolar large rRNA by RNA polymerase I

2 of 7

2.94

1.03

0.0139

GO:0036120

Cellular response to platelet-derived growth factor stimulus

2 of 8

2.88

1.03

0.0139

GO:0009303

rRNA transcription

2 of 8

2.88

1.03

0.0139

GO:0071364

Cellular response to epidermal growth factor stimulus

2 of 16

2.58

1.02

0.0139

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0004825

methionine-tRNA ligase activity

2 of 3

3.31

1.44

0.0026

GO:0004165

delta(3)-delta(2)-enoyl-CoA isomerase activity

2 of 8

2.88

1.23

0.0059

GO:0000062

fatty-acyl-CoA binding

2 of 17

2.55

1.05

0.0120

GO:0016853

Isomerase activity

3 of 183

1.7

0.95

0.0120

GO:0033218

Amide binding

3 of 290

1.5

0.76

0.0265

(more ...)

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0030992

Intraciliary transport particle B

2 of 16

2.58

1.04

0.0129

GO:0017101

aminoacyl-tRNA synthetase multienzyme complex

2 of 13

2.67

1.04

0.0129

GO:0005782

Peroxisomal matrix

2 of 20

2.48

1.03

0.0129

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:28161

Thiolase, C-terminal domain, and delta(3)-delta(2)-enoyl-CoA isomerase activity

2 of 6

3.01

1.04

0.0135

CL:19446

aminoacyl-tRNA synthetase multienzyme complex

2 of 6

3.01

1.04

0.0135

CL:1835

Intraciliary transport particle B

2 of 15

2.61

1.03

0.0135

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00450

Selenocompound metabolism

2 of 29

2.32

1.1

0.0092

map00970

Aminoacyl-tRNA biosynthesis

2 of 83

1.87

0.76

0.0350

map00071

Fatty acid degradation

2 of 86

1.85

0.76

0.0350

Reactome Pathways

pathway

description

count in network

strength

signal

false discovery rate

MAP-390247

Beta-oxidation of very long chain fatty acids

2 of 14

2.64

0.95

0.0188

MAP-2408522

Selenoamino acid metabolism

2 of 29

2.32

0.79

0.0363

MAP-379716

Cytosolic tRNA aminoacylation

2 of 34

2.25

0.78

0.0363

MAP-8978868

Fatty acid metabolism

3 of 247

1.57

0.71

0.0363

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0030992

Intraciliary transport particle B

2 of 11

2.74

1.06

0.0118

GOCC:0017101

aminoacyl-tRNA synthetase multienzyme complex

2 of 14

2.64

1.06

0.0118

GOCC:0005782

Peroxisomal matrix

2 of 21

2.46

1.05

0.0118

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR023458

Methionine-tRNA ligase, type 1

2 of 2

3.48

1.32

0.0042

IPR014758

Methionyl-tRNA synthetase

2 of 3

3.31

1.32

0.0042

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