STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY60053.1Tetratricopeptide TPR_1 repeat-containing protein; InterPro IPR019734: IPR001440; KEGG: plm:Plim_3515 tetratricopeptide TPR_4; PFAM: Tetratricopeptide TPR-1; SPTR: Putative uncharacterized protein. (872 aa)    
Predicted Functional Partners:
ADY60054.1
KEGG: psl:Psta_4334 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.630
ADY60055.1
KEGG: plm:Plim_3954 flagellar basal-body rod protein FlgB; SPTR: Probable flagellar basal-body rod protein FlgB.
   
   0.509
ADY60052.1
RDD domain containing protein; InterPro IPR010432; KEGG: plm:Plim_0068 hypothetical protein; PFAM: RDD; SPTR: Putative uncharacterized protein; PFAM: RDD family.
  
    0.438
ADY60056.1
COGs: COG1558 Flagellar basal body rod protein; InterPro IPR006299: IPR010930; KEGG: plm:Plim_3955 flagellar basal-body rod protein FlgC; PFAM: Protein of unknown function DUF1078, C-terminal; SPTR: Flagellar basal-body rod protein FlgC; TIGRFAM: Flagellar basal-body rod protein FlgC; PFAM: Domain of unknown function (DUF1078); Flagella basal body rod protein; TIGRFAM: flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
       0.401
Your Current Organism:
Rubinisphaera brasiliensis
NCBI taxonomy Id: 756272
Other names: Planctomyces brasiliensis ATCC 49424, Planctomyces brasiliensis DSM 5305, Planctomyces brasiliensis str. DSM 5305, Planctomyces brasiliensis strain DSM 5305, R. brasiliensis DSM 5305, Rubinisphaera brasiliensis DSM 5305
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.