STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY60294.1Protein of unknown function DUF455; COGs: COG2833 conserved hypothetical protein; InterPro IPR007402; KEGG: plm:Plim_1412 protein of unknown function DUF455; PFAM: Protein of unknown function DUF455; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF455). (264 aa)    
Predicted Functional Partners:
ADY60484.1
KEGG: plm:Plim_2754 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.754
ADY58969.1
Hypothetical protein; KEGG: plm:Plim_4071 spermine synthase; SPTR: Spermine/spermidine synthase family protein.
  
     0.599
ADY61647.1
Protein of unknown function DUF2079, membrane; COGs: COG3463 membrane protein; InterPro IPR018650; KEGG: plm:Plim_1336 membrane protein-like protein; PFAM: Protein of unknown function DUF2079, membrane; SPTR: Putative uncharacterized protein; PFAM: Predicted membrane protein (DUF2079).
  
     0.506
ADY61046.1
KEGG: plm:Plim_2201 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.472
ADY57927.1
Peptidoglycan-binding lysin domain protein; InterPro IPR018392: IPR002482; KEGG: plm:Plim_1787 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; SPTR: Peptidoglycan-binding LysM; PFAM: LysM domain.
  
     0.458
ADY60295.1
KEGG: rba:RB11461 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1569).
       0.431
ADY58456.1
InterPro IPR004846; KEGG: plm:Plim_0641 hypothetical protein; PFAM: Type II/III secretion system; SPTR: Putative uncharacterized protein; PFAM: Bacterial type II and III secretion system protein; Belongs to the bacterial secretin family.
  
     0.402
ADY59541.1
InterPro IPR019734: IPR001440; KEGG: plm:Plim_0675 tetratricopeptide domain protein; PFAM: Tetratricopeptide TPR-1; SPTR: Tetratricopeptide TPR_4; PFAM: Tetratricopeptide repeat.
  
     0.400
Your Current Organism:
Rubinisphaera brasiliensis
NCBI taxonomy Id: 756272
Other names: Planctomyces brasiliensis ATCC 49424, Planctomyces brasiliensis DSM 5305, Planctomyces brasiliensis str. DSM 5305, Planctomyces brasiliensis strain DSM 5305, R. brasiliensis DSM 5305, Rubinisphaera brasiliensis DSM 5305
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