STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY60410.1Signal peptide-domain containing protein; InterPro IPR012902; KEGG: rba:RB8718 signal peptide; SPTR: Putative uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; Protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain. (293 aa)    
Predicted Functional Partners:
ADY60406.1
Type II secretion system F domain protein; COGs: COG1459 Type II secretory pathway component PulF; InterPro IPR018076; KEGG: rba:RB8711 type IV pilus assembly protein TapC; PFAM: Type II secretion system F domain; SPTR: Fimbrial assembly protein PilC; PFAM: Bacterial type II secretion system protein F domain.
 
    0.832
ADY60407.1
Hypothetical protein; InterPro IPR012902; KEGG: afn:Acfer_1293 Tfp pilus assembly protein PilE-like protein; SPTR: Type II secretory pathway, pseudopilin PulG; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain.
       0.737
ADY60408.1
KEGG: psl:Psta_2142 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.737
ADY60409.1
Hypothetical protein; KEGG: rpi:Rpic_0668 putative transmembrane protein; SPTR: Putative uncharacterized protein.
       0.737
ADY60405.1
Type II secretion system F domain protein; COGs: COG1459 Type II secretory pathway component PulF; InterPro IPR018076; KEGG: mmr:Mmar10_0383 type II secretion system protein; PFAM: Type II secretion system F domain; SPTR: Type IV pilus assembly protein PilC; PFAM: Bacterial type II secretion system protein F domain.
  
    0.734
ADY60404.1
Type II secretion system F domain protein; COGs: COG1459 Type II secretory pathway component PulF; InterPro IPR018076; KEGG: sml:Smlt2740 putative general secretion pathway protein F; PFAM: Type II secretion system F domain; SPTR: General secretion pathway protein F; PFAM: Bacterial type II secretion system protein F domain.
  
    0.594
ADY60403.1
COGs: COG2804 Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB; InterPro IPR003593: IPR001482; KEGG: psl:Psta_2137 type II secretion system protein E; PFAM: Type II secretion system protein E; SMART: ATPase, AAA+ type, core; SPTR: Putative secretion pathway ATPase; PFAM: Type II/IV secretion system protein.
  
   0.524
ADY61637.1
COGs: COG4972 Tfp pilus assembly protein ATPase PilM; InterPro IPR005883; KEGG: plm:Plim_0076 type IV pilus assembly protein PilM; SPTR: Probable fimbrial assembly protein PilM; TIGRFAM: Type IV pilus assembly protein PilM; PFAM: Competence protein A; Cell division protein FtsA; TIGRFAM: type IV pilus assembly protein PilM.
  
     0.509
ADY62049.1
COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32); InterPro IPR014284: IPR007627: IPR007630; KEGG: plm:Plim_0381 RNA polymerase sigma factor, sigma-70 family; PFAM: RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; Mor transcription activator family; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
  
     0.500
ADY58432.1
KEGG: plm:Plim_0058 putative membrane bound transporter; SPTR: Putative uncharacterized protein.
  
     0.440
Your Current Organism:
Rubinisphaera brasiliensis
NCBI taxonomy Id: 756272
Other names: Planctomyces brasiliensis ATCC 49424, Planctomyces brasiliensis DSM 5305, Planctomyces brasiliensis str. DSM 5305, Planctomyces brasiliensis strain DSM 5305, R. brasiliensis DSM 5305, Rubinisphaera brasiliensis DSM 5305
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.