STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY60733.1KEGG: rba:RB674 hypothetical protein; SPTR: Putative uncharacterized protein. (65 aa)    
Predicted Functional Partners:
ADY60734.1
Hypothetical protein; COGs: COG1457 Purine-cytosine permease and related protein; KEGG: rba:RB675 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.594
rhaA
COGs: COG4806 L-rhamnose isomerase; InterPro IPR009308; KEGG: rba:RB678 L-rhamnose isomerase; PFAM: Rhamnose isomerase; PRIAM: L-rhamnose isomerase; SPTR: L-rhamnose isomerase; TIGRFAM: Rhamnose isomerase; PFAM: L-rhamnose isomerase (RhaA); TIGRFAM: L-rhamnose isomerase; Belongs to the rhamnose isomerase family.
       0.455
ADY60731.1
Class II aldolase/adducin family protein; COGs: COG0235 Ribulose-5-phosphate 4-epimerase and related epimerase and aldolase; InterPro IPR001303; KEGG: rba:RB681 L-fuculose-phosphate aldolase; PFAM: Class II aldolase/adducin, N-terminal; SPTR: Probable L-fuculose-phosphate aldolase; PFAM: Class II Aldolase and Adducin N-terminal domain; TIGRFAM: L-ribulose-5-phosphate 4-epimerase.
       0.449
ADY60732.1
Rhamnulokinase; COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018484; KEGG: plm:Plim_3420 carbohydrate kinase FGGY; PFAM: Carbohydrate kinase, FGGY, N-terminal; PRIAM: Rhamnulokinase; SPTR: Carbohydrate kinase, FGGY; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: rhamnulokinase.
       0.449
Your Current Organism:
Rubinisphaera brasiliensis
NCBI taxonomy Id: 756272
Other names: Planctomyces brasiliensis ATCC 49424, Planctomyces brasiliensis DSM 5305, Planctomyces brasiliensis str. DSM 5305, Planctomyces brasiliensis strain DSM 5305, R. brasiliensis DSM 5305, Rubinisphaera brasiliensis DSM 5305
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