STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY60739.1N-acetylneuraminate lyase; COGs: COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; InterPro IPR002220; KEGG: rba:RB3352 N-acetylneuraminate lyase; PFAM: Dihydrodipicolinate synthetase; PRIAM: N-acetylneuraminate lyase; SPTR: Probable N-acetylneuraminate lyase; manually curated; PFAM: Dihydrodipicolinate synthetase family; TIGRFAM: N-acetylneuraminate lyase. (309 aa)    
Predicted Functional Partners:
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
 
  
 0.784
ADY60738.1
SSS sodium solute transporter superfamily; COGs: COG0591 Na+/proline symporter; InterPro IPR006652: IPR001734: IPR019900; KEGG: rba:RB3349 putative sodium:solute symporter; PFAM: Sodium/solute symporter; Kelch repeat type 1; SPTR: Putative uncharacterized protein; TIGRFAM: Sodium/solute symporter, subgroup; PFAM: Sodium:solute symporter family; TIGRFAM: transporter, SSS family.
 
  
 0.713
ADY60144.1
Mandelate racemase/muconate lactonizing protein; COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR013342; KEGG: plm:Plim_1189 mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; SPTR: Mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain.
    
 0.698
ADY62369.1
COGs: COG0077 Prephenate dehydratase; InterPro IPR020822: IPR001086: IPR002912; KEGG: plm:Plim_2048 prephenate dehydratase; PFAM: Prephenate dehydratase; Chorismate mutase, type II; Amino acid-binding ACT; PRIAM: Prephenate dehydratase; SPTR: P-protein (PheA); PFAM: Prephenate dehydratase; Chorismate mutase type II.
  
  
 0.624
ADY60740.1
Hypothetical protein; KEGG: dre:100331349 myosin-3-like; SPTR: ADP-ribosyltransferase toxin aexT (Exoenzyme T); manually curated.
       0.556
asd
Aspartate semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.
 
  
 0.548
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
  
 0.529
gatC
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.
  
    0.510
ADY60741.1
Transcriptional regulator, AraC family; COGs: COG1609 Transcriptional regulators; InterPro IPR000005: IPR018060; KEGG: caa:Caka_1120 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Xylose operon regulatory protein; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family.
       0.505
ADY58258.1
InterPro IPR005135: IPR008185; KEGG: psl:Psta_2410 endonuclease/exonuclease/phosphatase; PFAM: Endonuclease/exonuclease/phosphatase; PRIAM: Deoxyribonuclease I; SMART: Deoxyribonuclease I, eukaryotic; SPTR: Endonuclease/exonuclease/phosphatase; PFAM: Endonuclease/Exonuclease/phosphatase family.
  
    0.474
Your Current Organism:
Rubinisphaera brasiliensis
NCBI taxonomy Id: 756272
Other names: Planctomyces brasiliensis ATCC 49424, Planctomyces brasiliensis DSM 5305, Planctomyces brasiliensis str. DSM 5305, Planctomyces brasiliensis strain DSM 5305, R. brasiliensis DSM 5305, Rubinisphaera brasiliensis DSM 5305
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