STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY60919.1RNA polymerase, sigma subunit, SigW; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284; KEGG: plm:Plim_3007 RNA polymerase sigma factor, sigma-70 family; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily. (215 aa)    
Predicted Functional Partners:
ADY60828.1
RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR013249: IPR014284; KEGG: psl:Psta_4286 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; SPTR: Sigma-70 region 2; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
  
     0.627
ADY60920.1
KEGG: sna:Snas_5902 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.615
ADY61487.1
RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284: IPR014331; KEGG: plm:Plim_1876 RNA polymerase sigma-70 factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: Probable RNA polymerase sigma factor rfaY; TIGRFAM: RNA polymerase sigma-70 ECF-like, Rhodopirellula baltica; RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 [...]
  
     0.474
ADY60921.1
InterPro IPR013429; KEGG: psl:Psta_3545 regulatory protein, FmdB family; PFAM: Regulatory protein, FmdB, putative; SPTR: Regulatory protein, FmdB family; TIGRFAM: Regulatory protein, FmdB, putative; PFAM: Zinc ribbon domain; TIGRFAM: putative regulatory protein, FmdB family.
       0.430
ADY60918.1
Integrase family protein; InterPro IPR002104; KEGG: tpd:Teth39_0093 phage integrase family protein; PFAM: Integrase, catalytic core, phage; SPTR: Integrase; PFAM: Phage integrase family; Belongs to the 'phage' integrase family.
       0.400
Your Current Organism:
Rubinisphaera brasiliensis
NCBI taxonomy Id: 756272
Other names: Planctomyces brasiliensis ATCC 49424, Planctomyces brasiliensis DSM 5305, Planctomyces brasiliensis str. DSM 5305, Planctomyces brasiliensis strain DSM 5305, R. brasiliensis DSM 5305, Rubinisphaera brasiliensis DSM 5305
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