STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY61395.1Intradiol ring-cleavage dioxygenase; COGs: COG3485 Protocatechuate 3 4-dioxygenase beta subunit; InterPro IPR019546: IPR000627: IPR006311; KEGG: rba:RB7678 protocatechuate 3,4-dioxygenase, beta subunit; PFAM: Intradiol ring-cleavage dioxygenase, C-terminal; Twin-arginine translocation pathway, signal sequence, subgroup; SPTR: Probable protocatechuate 3,4-dioxygenase, beta subunit; PFAM: TAT (twin-arginine translocation) pathway signal sequence; Dioxygenase; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence. (247 aa)    
Predicted Functional Partners:
ADY60926.1
Peptidase domain protein; InterPro IPR007280; KEGG: plm:Plim_1449 hypothetical protein; PFAM: Peptidase, C-terminal, archaeal/bacterial; SPTR: Putative uncharacterized protein; PFAM: Bacterial pre-peptidase C-terminal domain.
  
     0.479
ADY60925.1
InterPro IPR003343: IPR011444; KEGG: plm:Plim_1450 protein of unknown function DUF1549; PFAM: Protein of unknown function DUF1549; Bacterial Ig-like, group 2; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1549); Protein of unknown function (DUF1553).
  
     0.465
ADY61394.1
Cerebroside-sulfatase; COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rba:RB4851 N-acetylgalactosamine 6-sulfatase (GALNS); PFAM: Sulfatase; PRIAM: Cerebroside-sulfatase; SPTR: N-acetylgalactosamine 6-sulfatase (GALNS); PFAM: Sulfatase.
       0.465
ADY61396.1
KEGG: rba:RB10957 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Rho termination factor, N-terminal domain.
       0.450
ADY57916.1
InterPro IPR000182; KEGG: plm:Plim_1970 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family.
  
     0.409
ADY58844.1
InterPro IPR013428: IPR013427; KEGG: psl:Psta_0498 membrane-bound dehydrogenase domain protein; SPTR: Membrane-bound dehydrogenase domain protein; TIGRFAM: Putative membrane-bound dehydrogenase; Haem-binding domain, putative; PFAM: Cytochrome c; TIGRFAM: putative membrane-bound dehydrogenase domain; putative heme-binding domain, Pirellula/Verrucomicrobium type.
  
    0.408
ADY60924.1
WD40 repeat-containing protein; COGs: COG2319 FOG: WD40 repeat; InterPro IPR019781: IPR001680; KEGG: plm:Plim_1451 WD-40 repeat protein; PFAM: WD40 repeat, subgroup; SPTR: WD-40 repeat protein; PFAM: WD domain, G-beta repeat; Planctomycete cytochrome C.
  
     0.406
Your Current Organism:
Rubinisphaera brasiliensis
NCBI taxonomy Id: 756272
Other names: Planctomyces brasiliensis ATCC 49424, Planctomyces brasiliensis DSM 5305, Planctomyces brasiliensis str. DSM 5305, Planctomyces brasiliensis strain DSM 5305, R. brasiliensis DSM 5305, Rubinisphaera brasiliensis DSM 5305
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