STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY61838.1Mandelate racemase/muconate lactonizing protein; COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR013341: IPR013342; KEGG: sli:Slin_6349 mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; SPTR: Mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain. (343 aa)    
Predicted Functional Partners:
ADY61837.1
Protein of unknown function DUF1611; COGs: COG3367 conserved hypothetical protein; InterPro IPR011669; KEGG: rba:RB8684 hypothetical protein; PFAM: Protein of unknown function DUF1611; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1611).
     0.964
ADY61840.1
COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: rba:RB5208 biotin apo-protein ligase-related protein; PFAM: Beta-lactamase-related; SPTR: Similar to biotin apo-protein ligase-related protein; PFAM: Biotin-protein ligase, N terminal; Beta-lactamase.
 
     0.616
ADY61839.1
Peptidase C26; COGs: COG2071 glutamine amidotransferase; InterPro IPR011697; KEGG: cag:Cagg_3249 peptidase C26; PFAM: Peptidase C26; SPTR: Peptidase C26; PFAM: Peptidase C26.
       0.566
ADY61836.1
Transcriptional regulator, AraC family; COGs: COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; InterPro IPR018060: IPR000005; KEGG: rba:RB13139 xylose operon regulatory protein; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Xylose operon regulatory protein; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family.
       0.465
ADY61841.1
Transporter, NhaC family; COGs: COG1757 Na+/H+ antiporter; InterPro IPR018461; KEGG: swd:Swoo_3255 Na+/H+ antiporter NhaC; PFAM: Na+/H+ antiporter NhaC-like; SPTR: Na+/H+ antiporter NhaC; PFAM: Na+/H+ antiporter family; TC 2.A.35.
       0.415
Your Current Organism:
Rubinisphaera brasiliensis
NCBI taxonomy Id: 756272
Other names: Planctomyces brasiliensis ATCC 49424, Planctomyces brasiliensis DSM 5305, Planctomyces brasiliensis str. DSM 5305, Planctomyces brasiliensis strain DSM 5305, R. brasiliensis DSM 5305, Rubinisphaera brasiliensis DSM 5305
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