STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY61867.1Hypothetical protein; COGs: COG2165 Type II secretory pathway pseudopilin PulG; InterPro IPR012902; KEGG: plm:Plim_4235 protein of unknown function DUF1559; SPTR: Putative uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; Protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain. (315 aa)    
Predicted Functional Partners:
ADY61865.1
Oxidoreductase domain protein; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683; KEGG: rba:RB8781 NADH-dependent oxidoreductase; PFAM: Oxidoreductase, N-terminal; SPTR: Putative NADH-dependent oxidoreductase-possiblyglucose-fructose dependent oxidoreductase; PFAM: Oxidoreductase family, NAD-binding Rossmann fold.
       0.547
ADY61866.1
KEGG: plm:Plim_3725 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.547
ADY61868.1
Transcriptional regulator, AraC family; COGs: COG1609 Transcriptional regulators; InterPro IPR018060: IPR000005; KEGG: rba:RB522 xylose operon regulatory protein; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Xylose operon regulatory protein; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family.
       0.444
ADY61864.1
Hypothetical protein; InterPro IPR012902; KEGG: plm:Plim_3621 protein of unknown function DUF1559; SPTR: Putative uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; Protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain.
 
    
0.425
Your Current Organism:
Rubinisphaera brasiliensis
NCBI taxonomy Id: 756272
Other names: Planctomyces brasiliensis ATCC 49424, Planctomyces brasiliensis DSM 5305, Planctomyces brasiliensis str. DSM 5305, Planctomyces brasiliensis strain DSM 5305, R. brasiliensis DSM 5305, Rubinisphaera brasiliensis DSM 5305
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