STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY61889.1RNA polymerase, sigma subunit, ECF family; COGs: COG4941 RNA polymerase sigma factor containing a TPR repeat domain; InterPro IPR014284: IPR007627: IPR013249; KEGG: rba:RB555 ECF subfamily RNA polymerase sigma-70 factor; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: Probable sigma-70 factor, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family. (410 aa)    
Predicted Functional Partners:
ADY61892.1
YCII-related protein; COGs: COG3795 conserved hypothetical protein; InterPro IPR005545; KEGG: rba:RB560 hypothetical protein; PFAM: YCII-related; SPTR: Putative uncharacterized protein; PFAM: YCII-related domain.
 
     0.852
ADY61893.1
YCII-related protein; COGs: COG3795 conserved hypothetical protein; InterPro IPR005545; KEGG: bge:BC1002_1234 YCII-related protein; PFAM: YCII-related; SPTR: Putative uncharacterized protein; PFAM: YCII-related domain.
 
     0.828
ADY61894.1
YCII-related protein; COGs: COG3795 conserved hypothetical protein; InterPro IPR005545; KEGG: rba:RB12227 integral membrane protein; PFAM: YCII-related; SPTR: Probable integral membrane protein; PFAM: YCII-related domain.
 
     0.826
ADY59043.1
YCII-related protein; COGs: COG3795 conserved hypothetical protein; InterPro IPR005545; KEGG: psl:Psta_2743 YCII-related protein; PFAM: YCII-related; SPTR: DGPFAETKE domain protein; PFAM: YCII-related domain.
 
     0.785
ADY61890.1
Glyoxalase/bleomycin resistance protein/dioxygenase; COGs: COG2764 conserved hypothetical protein; InterPro IPR004360; KEGG: neu:NE0971 hypothetical protein; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: 3-demethylubiquinone-9 3-methyltransferase; PFAM: 3-demethylubiquinone-9 3-methyltransferase.
 
     0.614
ADY61891.1
Hypothetical protein; COGs: COG4319 Ketosteroid isomerase homolog; InterPro IPR011944; KEGG: rba:RB563 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: conserved hypothetical protein.
 
     0.506
ADY61888.1
InterPro IPR011444; KEGG: psl:Psta_3360 protein of unknown function DUF1549; PFAM: Protein of unknown function DUF1549; SPTR: Cis/trans isomerase-like protein; PFAM: Protein of unknown function (DUF1549); Planctomycete cytochrome C; Protein of unknown function (DUF1553).
       0.470
ADY59041.1
COGs: COG4312 conserved hypothetical protein; InterPro IPR010296; KEGG: kfl:Kfla_2601 protein of unknown function DUF899 thioredoxin family protein; PFAM: Protein of unknown function DUF899, thioredoxin-like; SPTR: Putative uncharacterized protein; PFAM: Bacterial protein of unknown function (DUF899).
 
    0.458
Your Current Organism:
Rubinisphaera brasiliensis
NCBI taxonomy Id: 756272
Other names: Planctomyces brasiliensis ATCC 49424, Planctomyces brasiliensis DSM 5305, Planctomyces brasiliensis str. DSM 5305, Planctomyces brasiliensis strain DSM 5305, R. brasiliensis DSM 5305, Rubinisphaera brasiliensis DSM 5305
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.