STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY62125.1COGs: COG0123 Deacetylase including yeast histone deacetylase and acetoin utilization protein; InterPro IPR000286; KEGG: dat:HRM2_13220 histone deacetylase superfamily protein; PFAM: Histone deacetylase superfamily; SPTR: Histone deacetylase superfamily protein; PFAM: Histone deacetylase domain. (579 aa)    
Predicted Functional Partners:
ADY62124.1
InterPro IPR000182; KEGG: dol:Dole_1891 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family.
     0.987
ADY62126.1
COGs: COG1181 D-alanine-D-alanine ligase and related ATP-grasp protein; InterPro IPR011095; KEGG: sfu:Sfum_0713 D-alanine--D-alanine ligase domain-containing protein; PFAM: D-alanine--D-alanine ligase, C-terminal; SPTR: D-alanine--D-alanine ligase domain protein; PFAM: D-ala D-ala ligase C-terminus; TIGRFAM: D-alanine--D-alanine ligase.
 
     0.905
ADY62127.1
D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
 
     0.904
ADY60924.1
WD40 repeat-containing protein; COGs: COG2319 FOG: WD40 repeat; InterPro IPR019781: IPR001680; KEGG: plm:Plim_1451 WD-40 repeat protein; PFAM: WD40 repeat, subgroup; SPTR: WD-40 repeat protein; PFAM: WD domain, G-beta repeat; Planctomycete cytochrome C.
    
 0.841
ADY62123.1
COGs: COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; InterPro IPR002130; KEGG: plm:Plim_3119 peptidyl-prolyl cis-trans isomerase cyclophilin type; PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; SPTR: Peptidyl-prolyl cis-trans isomerase, cyclophilin type; PFAM: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD.
  
  0.625
ADY62128.1
InterPro IPR005358; KEGG: psl:Psta_3378 protein of unknown function UPF0153; PFAM: Uncharacterised protein family UPF0153; SPTR: Putative uncharacterized protein; PFAM: Uncharacterised protein family (UPF0153).
       0.595
ADY62129.1
L-lysine 2,3-aminomutase; COGs: COG1509 Lysine 2 3-aminomutase; InterPro IPR003739: IPR007197; KEGG: psl:Psta_3379 lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM; PRIAM: Lysine 2,3-aminomutase; SPTR: Lysine 2,3-aminomutase YodO family protein; TIGRFAM: Protein of unknown function DUF160; PFAM: Lysine-2,3-aminomutase; Radical SAM superfamily; TIGRFAM: KamA family protein.
 
     0.553
ADY58755.1
Helicase domain protein; COGs: COG0553 Superfamily II DNA/RNA helicase SNF2 family; InterPro IPR014001: IPR001650: IPR000330; KEGG: ace:Acel_0816 helicase domain-containing protein; PFAM: DNA/RNA helicase, C-terminal; SNF2-related; SMART: DNA/RNA helicase, C-terminal; DEAD-like helicase, N-terminal; SPTR: Helicase domain protein; PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain.
  
 
 0.496
ADY58132.1
SNF2-related protein; COGs: COG0553 Superfamily II DNA/RNA helicase SNF2 family; InterPro IPR000330: IPR001650: IPR014001; KEGG: plm:Plim_0368 SNF2-related protein; PFAM: SNF2-related; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: Swi/snf family helicase_2; PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain.
    
 0.403
ADY61983.1
SNF2-related protein; COGs: COG0553 Superfamily II DNA/RNA helicase SNF2 family; InterPro IPR014001: IPR001650: IPR000330; KEGG: plm:Plim_2303 SNF2-related protein; PFAM: SNF2-related; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: Snf2 family protein; PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain.
    
 0.403
Your Current Organism:
Rubinisphaera brasiliensis
NCBI taxonomy Id: 756272
Other names: Planctomyces brasiliensis ATCC 49424, Planctomyces brasiliensis DSM 5305, Planctomyces brasiliensis str. DSM 5305, Planctomyces brasiliensis strain DSM 5305, R. brasiliensis DSM 5305, Rubinisphaera brasiliensis DSM 5305
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