STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM00140.1LysM domain-containing protein; PFAM: LysM domain. (321 aa)    
Predicted Functional Partners:
AFM00177.1
LysM domain-containing protein; PFAM: LysM domain.
 
   
 0.738
AFL99762.1
Hypothetical protein.
 
     0.720
AFL99811.1
Hypothetical protein.
  
     0.717
AFL99759.1
PFAM: Phage tail sheath protein.
 
 
 0.715
AFL99522.1
PFAM: Phage tail sheath protein.
 
 
 0.707
AFL99341.1
Hypothetical protein.
  
     0.697
AFL99766.1
PFAM: Protein of unknown function (DUF2634).
 
   0.681
AFL99533.1
PFAM: Protein of unknown function (DUF2634).
 
   0.658
AFL99767.1
Putative phage Mu protein gp47-like protein; PFAM: Baseplate J-like protein.
 
 
 0.643
AFL99534.1
Putative phage Mu protein gp47-like protein; PFAM: Baseplate J-like protein.
 
 
 0.642
Your Current Organism:
Desulfitobacterium dehalogenans
NCBI taxonomy Id: 756499
Other names: D. dehalogenans ATCC 51507, Desulfitobacterium dehalogenans ATCC 51507, Desulfitobacterium dehalogenans DSM 9161, Desulfitobacterium dehalogenans JW/IU-DC1, Desulfitobacterium dehalogenans str. ATCC 51507, Desulfitobacterium dehalogenans strain ATCC 51507
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.