STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM00145.1Hypothetical protein. (145 aa)    
Predicted Functional Partners:
AFL98635.1
Hypothetical protein; PFAM: Bacterial transcription activator, effector binding domain.
 
    0.496
AFL98637.1
Site-specific recombinase XerD; PFAM: Phage integrase family.
  
    0.491
AFM00143.1
PFAM: HSP20-like domain of unknown function (DUF1813).
       0.470
AFM00144.1
DMT(drug/metabolite transporter) superfamily permease; PFAM: EamA-like transporter family.
       0.470
AFM00127.1
Hypothetical protein; PFAM: Bacterial transcription activator, effector binding domain.
 
    0.454
AFM00252.1
Hypothetical protein; PFAM: Bacterial transcription activator, effector binding domain.
 
    0.430
Your Current Organism:
Desulfitobacterium dehalogenans
NCBI taxonomy Id: 756499
Other names: D. dehalogenans ATCC 51507, Desulfitobacterium dehalogenans ATCC 51507, Desulfitobacterium dehalogenans DSM 9161, Desulfitobacterium dehalogenans JW/IU-DC1, Desulfitobacterium dehalogenans str. ATCC 51507, Desulfitobacterium dehalogenans strain ATCC 51507
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.