STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM00387.1Fe-S-cluster-containing hydrogenase subunit. (205 aa)    
Predicted Functional Partners:
AFM00388.1
PFAM: Polysulphide reductase, NrfD.
 
   0.869
AFM00386.1
Anaerobic dehydrogenase, typically selenocysteine-containing; PFAM: TAT (twin-arginine translocation) pathway signal sequence; Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; Response regulator receiver domain; Molybdopterin oxidoreductase Fe4S4 domain; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
   0.811
AFM00113.1
PFAM: Polysulphide reductase, NrfD.
 
   0.676
AFM00383.1
PFAM: Polysulphide reductase, NrfD.
 
   0.666
AFL99385.1
PFAM: Polysulphide reductase, NrfD.
 
   0.651
AFM01867.1
PFAM: Polysulphide reductase, NrfD.
 
   0.564
AFM01860.1
PFAM: Polysulphide reductase, NrfD.
 
   0.562
AFM02347.1
PFAM: Polysulphide reductase, NrfD.
 
   0.554
AFM00247.1
PFAM: Polysulphide reductase, NrfD.
 
   0.541
AFM02350.1
Anaerobic dehydrogenase, typically selenocysteine-containing; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
   0.527
Your Current Organism:
Desulfitobacterium dehalogenans
NCBI taxonomy Id: 756499
Other names: D. dehalogenans ATCC 51507, Desulfitobacterium dehalogenans ATCC 51507, Desulfitobacterium dehalogenans DSM 9161, Desulfitobacterium dehalogenans JW/IU-DC1, Desulfitobacterium dehalogenans str. ATCC 51507, Desulfitobacterium dehalogenans strain ATCC 51507
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