Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AFM00510.1PFAM: N-acetylmuramoyl-L-alanine amidase; Putative cell wall binding repeat 2; Bacterial SH3 domain; TIGRFAM: N-acetylmuramoyl-L-alanine amidase CwlD. (844 aa)    
Predicted Functional Partners:
AFM00457.1
Cell wall-associated hydrolase, invasion-associated protein; PFAM: NlpC/P60 family; G5 domain; LysM domain.
 
  
 0.718
AFM01990.1
Membrane-bound metallopeptidase; PFAM: Peptidase family M23.
 
   0.620
AFM02272.1
Hypothetical protein.
  
     0.607
AFM01591.1
PFAM: Protein kinase domain; PASTA domain.
     
 0.584
AFM00298.1
tRNA nucleotidyltransferase/poly(A) polymerase; PFAM: Poly A polymerase head domain; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
 
 
 0.554
AFM01746.1
Beta-galactosidase/beta-glucuronidase; PFAM: domain; Glycosyl hydrolases family 2, sugar binding domain.
  
  
 0.550
AFL99431.1
Hypothetical protein.
 
 
   0.546
AFM02012.1
Mn-containing catalase; PFAM: Rubrerythrin; LysM domain.
 
  
 0.544
AFM01338.1
SpoIID/LytB domain protein; PFAM: Stage II sporulation protein; TIGRFAM: SpoIID/LytB domain.
 
  
 0.536
AFM01928.1
Lysophospholipase L1-like esterase; PFAM: GDSL-like Lipase/Acylhydrolase; manually curated.
 
   
 0.533
Your Current Organism:
Desulfitobacterium dehalogenans
NCBI taxonomy Id: 756499
Other names: D. dehalogenans ATCC 51507, Desulfitobacterium dehalogenans ATCC 51507, Desulfitobacterium dehalogenans DSM 9161, Desulfitobacterium dehalogenans JW/IU-DC1, Desulfitobacterium dehalogenans str. ATCC 51507, Desulfitobacterium dehalogenans strain ATCC 51507
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