STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM01057.1Hypothetical protein. (126 aa)    
Predicted Functional Partners:
AFM01056.1
CBS domain-containing protein; PFAM: CBS domain; Domain of unknown function DUF21; Transporter associated domain.
       0.592
AFM01058.1
Hypothetical protein.
       0.586
AFM01059.1
Hypothetical protein.
       0.586
htpX
Heat shock protein; PFAM: Peptidase family M48; Belongs to the peptidase M48B family.
       0.482
AFM01060.1
Germination protein, Ger(X)C family; PFAM: Spore germination B3/ GerAC like, C-terminal; TIGRFAM: germination protein, Ger(x)C family.
       0.424
AFM01061.1
PFAM: Bacillus/Clostridium GerA spore germination protein.
       0.424
AFM01062.1
PFAM: Spore germination protein; TIGRFAM: spore germination protein (amino acid permease).
       0.424
Your Current Organism:
Desulfitobacterium dehalogenans
NCBI taxonomy Id: 756499
Other names: D. dehalogenans ATCC 51507, Desulfitobacterium dehalogenans ATCC 51507, Desulfitobacterium dehalogenans DSM 9161, Desulfitobacterium dehalogenans JW/IU-DC1, Desulfitobacterium dehalogenans str. ATCC 51507, Desulfitobacterium dehalogenans strain ATCC 51507
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.