Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AFM01443.1Hypothetical protein. (611 aa)    
Predicted Functional Partners:
AFM01444.1
Hypothetical protein.
 
  
 0.960
AFM01478.1
DNA primase; PFAM: CHC2 zinc finger.
 
   
 0.781
AFM01442.1
Metalloendopeptidase-like membrane protein; PFAM: Peptidase family M23.
  
    0.774
AFM01441.1
Hypothetical protein.
       0.741
AFM01484.1
ParB-like partition protein; PFAM: ParB-like nuclease domain; TIGRFAM: ParB-like partition proteins; Belongs to the ParB family.
 
   
 0.650
AFM01445.1
Hypothetical protein.
       0.634
AFM01447.1
Hypothetical protein.
       0.616
AFM01694.1
PFAM: RHS Repeat; TGF-beta propeptide; LysM domain; TIGRFAM: RHS repeat-associated core domain; YD repeat (two copies).
 
    0.616
AFM01446.1
Hypothetical protein.
       0.599
AFL99275.1
Transcriptional regulator, AbrB family; PFAM: SpoVT / AbrB like domain; TIGRFAM: looped-hinge helix DNA binding domain, AbrB family.
 
     0.568
Your Current Organism:
Desulfitobacterium dehalogenans
NCBI taxonomy Id: 756499
Other names: D. dehalogenans ATCC 51507, Desulfitobacterium dehalogenans ATCC 51507, Desulfitobacterium dehalogenans DSM 9161, Desulfitobacterium dehalogenans JW/IU-DC1, Desulfitobacterium dehalogenans str. ATCC 51507, Desulfitobacterium dehalogenans strain ATCC 51507
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