STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM02219.1PFAM: PhnA protein; PhnA Zinc-Ribbon; TIGRFAM: alkylphosphonate utilization operon protein PhnA. (113 aa)    
Predicted Functional Partners:
AFM02218.1
Putative AP superfamily protein; PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase.
       0.592
AFM02220.1
4Fe-4S protein; Manually curated.
       0.576
AFM02217.1
PFAM: Universal stress protein family.
  
    0.496
AFM02221.1
PFAM: Polysulphide reductase, NrfD.
       0.485
AFM02222.1
Fe-S-cluster-containing hydrogenase subunit; PFAM: 4Fe-4S binding domain.
       0.427
AFM02223.1
Hydrogenase, Fe-only; PFAM: Iron only hydrogenase large subunit, C-terminal domain; Iron hydrogenase small subunit; TIGRFAM: [FeFe] hydrogenase, group A.
       0.420
Your Current Organism:
Desulfitobacterium dehalogenans
NCBI taxonomy Id: 756499
Other names: D. dehalogenans ATCC 51507, Desulfitobacterium dehalogenans ATCC 51507, Desulfitobacterium dehalogenans DSM 9161, Desulfitobacterium dehalogenans JW/IU-DC1, Desulfitobacterium dehalogenans str. ATCC 51507, Desulfitobacterium dehalogenans strain ATCC 51507
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